1. Home
  2. Species
  3. Picea abies
  4. Sequence
  5. MA_4534g0010

MA_4534g0010


Description : Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana (sp|q94br5|chr28_arath : 370.0)


Gene families : OG0003006 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003006_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_4534g0010
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
AT1G11100 No alias SNF2 domain-containing protein / helicase... 0.02 OrthoFinder output from all 47 species
AT1G50410 No alias SNF2 domain-containing protein / helicase... 0.05 OrthoFinder output from all 47 species
AT1G61140 EDA16 SNF2 domain-containing protein / helicase... 0.02 OrthoFinder output from all 47 species
Adi_g011606 No alias chromatin remodeling factor *(Ris1) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g34337 No alias chromatin remodeling factor *(Ris1) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g03860 EDA16 chromatin remodeling factor *(Ris1) & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g10693 No alias chromatin remodeling factor *(Ris1) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0221.g058736 EDA16 chromatin remodeling factor *(Ris1) & original... 0.04 OrthoFinder output from all 47 species
Ceric.28G036100.1 Ceric.28G036100 chromatin remodeling factor *(Ris1) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01034370001 No alias Chromatin organisation.chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Gb_33076 No alias chromatin remodeling factor (Ris1) 0.05 OrthoFinder output from all 47 species
LOC_Os01g57110.1 EDA16, LOC_Os01g57110 chromatin remodeling factor (Ris1) 0.03 OrthoFinder output from all 47 species
LOC_Os08g08220.1 LOC_Os08g08220 chromatin remodeling factor (Rad5). chromatin remodeling... 0.03 OrthoFinder output from all 47 species
Mp8g05230.1 No alias chromatin remodeling factor (Ris1) 0.03 OrthoFinder output from all 47 species
Pir_g17386 No alias chromatin remodeling factor *(Ris1) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000330 SNF2_N 19 341
No external refs found!