MA_412147g0010 (SOC1, AGL20, ATSOC1)

Aliases : SOC1, AGL20, ATSOC1

Description : no hits & (original description: none)

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_412147g0010

Target	Alias	Description	ECC score	Gene Family Method
Adi_g008614	AGL16	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g111937	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g50829	GL19, AGL19	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g33008	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g37797	AGL16	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g70719	AGL16	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene68989.t2	SOC1, AGL20,...	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s2186.g109823	No alias	not classified & original description: CDS=5-496	0.04	OrthoFinder output from all 47 species
Cba_g13555	AGL16	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g23820	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Cba_g76647	STK, AGL11	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Ceric.1Z082000.1	Ceric.1Z082000	MADS/AGL-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01037022001	AGL62	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
Gb_16301	STK, AGL11	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
LOC_Os04g23910.1	AGL16, LOC_Os04g23910	transcription factor (MADS/AGL)	0.05	OrthoFinder output from all 47 species
LOC_Os04g49150.1	AGL6, LOC_Os04g49150	transcription factor (MADS/AGL)	0.05	OrthoFinder output from all 47 species
LOC_Os08g41950.1	AGL9, SEP3,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Len_g29992	STK, AGL11	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g14037	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g36451	AGL6	MADS/AGL-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Lfl_g36730	AGL6	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g40743	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
MA_133455g0010	AGL6	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
MA_16120g0010	AGL14	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
MA_276701g0010	SOC1, AGL20, ATSOC1	transcription factor (MADS/AGL)	0.05	OrthoFinder output from all 47 species
MA_458668g0010	SOC1, AGL20, ATSOC1	transcription factor (MADS/AGL)	0.05	OrthoFinder output from all 47 species
MA_95674g0010	SOC1, AGL20, ATSOC1	transcription factor (MADS/AGL)	0.06	OrthoFinder output from all 47 species
Msp_g06433	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g07382	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g08455	AGL21	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012202	No alias	MADS/AGL-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sam_g15459	No alias	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g27238	No alias	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Sam_g35224	No alias	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc03g019710.3.1	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Solyc10g017630.3.1	SOC1, AGL20,...	MADS-box protein SOC1 OS=Arabidopsis thaliana...	0.07	OrthoFinder output from all 47 species
Spa_g15477	GL19, AGL19	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g17729	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	2	46

External Links

No external refs found!

MA_412147g0010 (SOC1, AGL20, ATSOC1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation