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  5. MA_35091g0010

MA_35091g0010


Description : RING-H2-class E3 ligase


Gene families : OG0002999 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002999_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_35091g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00242060 ATL43,... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AT2G20030 No alias RING/U-box superfamily protein 0.05 OrthoFinder output from all 47 species
AT4G28890 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
Aspi01Gene18266.t1 Aspi01Gene18266 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Dcu_g03051 ATL43 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
GSVIVT01015336001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
MA_179334g0010 No alias RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Pir_g36297 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30629 ATL43 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ppi_g30667 ATL43 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003504 ATL43 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Solyc05g018310.1.1 Solyc05g018310 RING-H2-class E3 ligase 0.05 OrthoFinder output from all 47 species
Solyc12g007320.1.1 Solyc12g007320 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Zm00001e032612_P001 Zm00001e032612 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005319 lipid transporter activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006869 lipid transport IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:0120009 intermembrane lipid transfer IEP HCCA
MF GO:0120013 lipid transfer activity IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 29 72
No external refs found!