MA_287424g0010 (SOC1, AGL20, ATSOC1)

Aliases : SOC1, AGL20, ATSOC1

Description : no hits & (original description: none)

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_287424g0010
Cluster	HCCA: Cluster_231

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00071p00198970	XAL1, AGL12,...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
AMTR_s00109p00015260	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
AT4G09960	STK, AGL11	K-box region and MADS-box transcription factor family protein	0.02	OrthoFinder output from all 47 species
AT5G23260	AGL32, TT16, ABS	K-box region and MADS-box transcription factor family protein	0.02	OrthoFinder output from all 47 species
Aspi01Gene13944.t1	AGL18, Aspi01Gene13944	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene54037.t3	Aspi01Gene54037	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g44922	AGL42	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.12G052200.1	GL19, AGL19,...	MADS/AGL-type transcription factor & original...	0.08	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000944.9	AGL15	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
GSVIVT01000175001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
Gb_19897	AGL16	MADS-box transcription factor 27 OS=Oryza sativa subsp....	0.05	OrthoFinder output from all 47 species
Len_g38722	AGL1, SHP1	MADS/AGL-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
MA_10232726g0010	AGL2, SEP1	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
MA_10332736g0010	STK, AGL11	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
MA_16629g0010	ANR1, AGL44	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
MA_5917g0010	AGL9, SEP3	transcription factor (MADS/AGL)	0.05	OrthoFinder output from all 47 species
MA_6544g0010	STK, AGL11	Floral homeotic protein AGAMOUS OS=Panax ginseng...	0.04	OrthoFinder output from all 47 species
Msp_g20990	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g56067	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0033.g011014	AGL9, SEP3	MADS/AGL-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0271.g027022	AGL7, AP1	MADS/AGL-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Solyc01g106710.1.1	AGL62, Solyc01g106710	component MED19 of head module of MEDIATOR transcription...	0.03	OrthoFinder output from all 47 species
Solyc02g065730.2.1	AGL8, FUL, Solyc02g065730	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Spa_g23073	AGL6	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	2	61

External Links

No external refs found!

MA_287424g0010 (SOC1, AGL20, ATSOC1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation