MA_27512g0010 (PUB15)

Aliases : PUB15

Description : E3 ubiquitin ligase (PUB)

Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_27512g0010

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00025p00052670	PUB13, ATPUB13,...	Protein degradation.peptide tagging.Ubiquitin...	0.02	OrthoFinder output from all 47 species
AT5G42340	PUB15	Plant U-Box 15	0.05	OrthoFinder output from all 47 species
Adi_g057744	PUB14, ATPUB14	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g06113	PUB13, ATPUB13	E3 ubiquitin ligase *(PUB15) & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g07263	PUB13, ATPUB13	E3 ubiquitin ligase *(PUB15) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g03476	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0001.g000295	No alias	not classified & original description: CDS=1-2304	0.03	OrthoFinder output from all 47 species
Dac_g03673	PUB14, ATPUB14	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g07071	PUB13, ATPUB13	E3 ubiquitin ligase *(PUB15) & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g01430	PUB13, ATPUB13	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g26730	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g04978	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g18007	ATPUB17, PUB17	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01007275001	PUB9, ATPUB9	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
Gb_12875	PUB13, ATPUB13	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
LOC_Os01g60860.1	LOC_Os01g60860	U-box domain-containing protein 16 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
LOC_Os08g37570.1	PUB15, LOC_Os08g37570	U-box domain-containing protein 15 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os12g38210.1	PUB13, ATPUB13,...	E3 ubiquitin ligase (PUB)	0.04	OrthoFinder output from all 47 species
Len_g08149	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
MA_1773g0020	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula...	0.02	OrthoFinder output from all 47 species
Msp_g37725	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g25238	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g28799	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g28901	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g39748	PUB13, ATPUB13	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g11291	PUB8, B80	E3 ubiquitin ligase *(PUB8) & original description: none	0.04	OrthoFinder output from all 47 species
Pnu_g28259	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g33345	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g25175	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Smo415326	ATPUB17, PUB17	U-box domain-containing protein 1 OS=Medicago truncatula	0.03	OrthoFinder output from all 47 species
Solyc11g008390.2.1	PUB14, ATPUB14,...	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Spa_g04508	PUB8, B80	E3 ubiquitin ligase *(PUB8) & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g11287	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g11467	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g54242	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e001174_P001	PUB13, ATPUB13,...	E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp....	0.02	OrthoFinder output from all 47 species
Zm00001e003398_P001	PUB15, Zm00001e003398	U-box domain-containing protein 15 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Zm00001e013323_P001	PUB15, Zm00001e013323	U-box domain-containing protein 15 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004180	carboxypeptidase activity	IEP	HCCA
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
MF	GO:0008236	serine-type peptidase activity	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
MF	GO:0008373	sialyltransferase activity	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016409	palmitoyltransferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0017171	serine hydrolase activity	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
MF	GO:0070008	serine-type exopeptidase activity	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	122	191
IPR000225	Armadillo	329	367
IPR000225	Armadillo	288	326
IPR000225	Armadillo	246	285

External Links

No external refs found!

MA_27512g0010 (PUB15)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation