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  5. MA_217423g0010

MA_217423g0010 (ATRPA70A, RPA1A,...)


Aliases : ATRPA70A, RPA1A, ATRPA1A, RPA70A

Description : component RPA1 of single-stranded-DNA binding RPA complex. component RPA1 of RPA presynaptic filament assembly factor complex


Gene families : OG0002229 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002229_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_217423g0010
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
Als_g07746 ATRPA70A, RPA1A,... component *(RPA1) of RPA presynaptic filament assembly... 0.05 OrthoFinder output from all 47 species
Aop_g04511 ATRPA70A, RPA1A,... component *(RPA1) of RPA presynaptic filament assembly... 0.02 OrthoFinder output from all 47 species
Ceric.07G018700.1 ATRPA70A, RPA1A,... component *(RPA1) of RPA presynaptic filament assembly... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000823.18 No alias Replication protein A 70 kDa DNA-binding subunit E... 0.02 OrthoFinder output from all 47 species
Zm00001e029651_P001 Zm00001e029651 component RPA1 of single-stranded-DNA binding RPA... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
InterPro domains Description Start Stop
IPR013955 Rep_factor-A_C 495 646
IPR004365 NA-bd_OB_tRNA 224 306
IPR031657 REPA_OB_2 334 438
IPR001878 Znf_CCHC 771 785
IPR001878 Znf_CCHC 729 744
IPR007199 Rep_factor-A_N 5 101
No external refs found!