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  5. MA_19897g0010

MA_19897g0010


Description : E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana (sp|q94ak4|rzf1_arath : 165.0)


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_19897g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00135070 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AT3G13430 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G60080 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G64920 CIP8 COP1-interacting protein 8 0.03 OrthoFinder output from all 47 species
Adi_g012249 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g102739 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Aev_g01231 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g06321 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g46210 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g03358 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene27542.t1 Aspi01Gene27542 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene58136.t1 Aspi01Gene58136 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0185.g056585 No alias not classified & original description: CDS=1-1950 0.02 OrthoFinder output from all 47 species
Cba_g10356 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g24805 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ceric.14G002100.1 Ceric.14G002100 not classified & original description: pacid=50633322... 0.04 OrthoFinder output from all 47 species
GSVIVT01029345001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder output from all 47 species
Gb_22125 No alias E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os01g58780.1 RHC1A, LOC_Os01g58780 Probable E3 ubiquitin-protein ligase RHC1A... 0.02 OrthoFinder output from all 47 species
Lfl_g28304 RHC1A RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
MA_433917g0010 RHC1A Probable E3 ubiquitin-protein ligase RHC1A... 0.03 OrthoFinder output from all 47 species
MA_76949g0010 No alias E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_816375g0010 RHC1A Probable E3 ubiquitin-protein ligase RHC1A... 0.03 OrthoFinder output from all 47 species
Msp_g10979 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Nbi_g02165 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g02691 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g29204 RHC1A RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pir_g40250 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g06797 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ppi_g00999 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012286 No alias not classified & original description: CDS=1-1674 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0061.g015372 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Sam_g19690 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc02g089410.3.1 Solyc02g089410 E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.03 OrthoFinder output from all 47 species
Spa_g20368 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08969 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g23873 No alias RING-H2-class BTL-subclass E3 ubiquiTin ligase &... 0.02 OrthoFinder output from all 47 species
Zm00001e030803_P001 Zm00001e030803 Probable E3 ubiquitin-protein ligase RHC1A... 0.03 OrthoFinder output from all 47 species
Zm00001e038199_P001 RHC1A, Zm00001e038199 Probable E3 ubiquitin-protein ligase RHC1A... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005672 transcription factor TFIIA complex IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 163 205
No external refs found!