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  5. MA_185203g0010

MA_185203g0010


Description : pectate lyase


Gene families : OG0000492 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000492_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_185203g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00173370 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.04 OrthoFinder output from all 47 species
AMTR_s00171p00044290 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 OrthoFinder output from all 47 species
GSVIVT01016208001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 OrthoFinder output from all 47 species
LOC_Os05g22800.1 LOC_Os05g22800 pectate lyase 0.05 OrthoFinder output from all 47 species
LOC_Os10g31910.1 LOC_Os10g31910 pectate lyase 0.02 OrthoFinder output from all 47 species
MA_10428603g0020 No alias pectate lyase 0.04 OrthoFinder output from all 47 species
MA_10437227g0010 No alias pectate lyase 0.05 OrthoFinder output from all 47 species
Spa_g06272 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g31391 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g47003 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g57258 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
InterPro domains Description Start Stop
IPR002022 Pec_lyase 106 253
No external refs found!