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  5. MA_18233g0020

MA_18233g0020


Description : Pentatricopeptide repeat-containing protein At2g40240, mitochondrial OS=Arabidopsis thaliana (sp|q9s733|pp196_arath : 137.0)


Gene families : OG0008339 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008339_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_18233g0020
Cluster HCCA: Cluster_188

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00144p00054940 EMB2453, ATPPR5,... Pentatricopeptide repeat-containing protein At2g40240,... 0.02 OrthoFinder output from all 47 species
AMTR_s00153p00079500 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g56030,... 0.03 OrthoFinder output from all 47 species
Ehy_g13721 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_33603 No alias Pentatricopeptide repeat-containing protein At1g12775,... 0.02 OrthoFinder output from all 47 species
Mp1g17150.1 No alias Pentatricopeptide repeat-containing protein At1g51965,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003856 3-dehydroquinate synthase activity IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 359 404
IPR033443 PPR_long 164 310
IPR002885 Pentatricopeptide_repeat 333 355
No external refs found!