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  5. MA_1773g0020

MA_1773g0020 (ATPUB17, PUB17)


Aliases : ATPUB17, PUB17

Description : U-box domain-containing protein 1 OS=Medicago truncatula (sp|e4nkf8|pub1_medtr : 154.0)


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_1773g0020
Cluster HCCA: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00030110 PUB15,... U-box domain-containing protein 15 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Aev_g06113 PUB13, ATPUB13 E3 ubiquitin ligase *(PUB15) & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g03476 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene48250.t1 ARF1A1C, Aspi01Gene48250 ARF-GTPase *(ARF1) & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g03673 PUB14, ATPUB14 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Gb_08792 ATPUB17, PUB17 U-box domain-containing protein 1 OS=Medicago truncatula... 0.02 OrthoFinder output from all 47 species
LOC_Os08g37570.1 PUB15, LOC_Os08g37570 U-box domain-containing protein 15 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
MA_27512g0010 PUB15 E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
Nbi_g02927 PUB14, ATPUB14 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g28799 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g39748 PUB13, ATPUB13 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g01986 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005301 PUB13, ATPUB13 not classified & original description: CDS=201-2096 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0117.g021169 No alias not classified & original description: CDS=1-882 0.01 OrthoFinder output from all 47 species
Solyc12g088360.2.1 Solyc12g088360 U-box domain-containing protein 4 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species
Zm00001e013323_P001 PUB15, Zm00001e013323 U-box domain-containing protein 15 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA

No InterPro domains available for this sequence

No external refs found!