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  5. MA_175090g0010

MA_175090g0010


Description : no hits & (original description: none)


Gene families : OG0000663 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000663_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_175090g0010
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00115450 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
AT5G42700 No alias AP2/B3-like transcriptional factor family protein 0.02 OrthoFinder output from all 47 species
AT5G58280 No alias AP2/B3-like transcriptional factor family protein 0.03 OrthoFinder output from all 47 species
Als_g51859 No alias REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g06897 No alias REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.14G017400.1 Ceric.14G017400 REM-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.35G050300.1 Ceric.35G050300 REM-type transcription factor & original description:... 0.06 OrthoFinder output from all 47 species
Dcu_g18248 No alias REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Gb_07025 No alias transcription factor (REM) 0.05 OrthoFinder output from all 47 species
Len_g55690 No alias REM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Len_g56640 No alias REM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Mp2g08790.1 No alias transcription factor (REM) 0.07 OrthoFinder output from all 47 species
Nbi_g34487 No alias REM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g11582 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g11583 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g48173 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Solyc04g079130.2.1 Solyc04g079130 transcription factor (REM) 0.02 OrthoFinder output from all 47 species
Solyc06g034140.3.1 Solyc06g034140 transcription factor (REM) 0.03 OrthoFinder output from all 47 species
Tin_g00720 No alias REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g11017 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Tin_g29854 No alias REM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e021582_P001 Zm00001e021582 transcription factor (REM) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 252 344
No external refs found!