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  5. MA_15346g0010

MA_15346g0010 (ATSMC2)


Aliases : ATSMC2

Description : component CAP-E2/SMC2 of condensin I/II complex


Gene families : OG0005512 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005512_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_15346g0010
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00193070 ATSMC2,... Cell cycle.mitosis and meiosis.chromatin... 0.12 OrthoFinder output from all 47 species
AT3G47460 ATSMC2 Structural maintenance of chromosomes (SMC) family protein 0.13 OrthoFinder output from all 47 species
AT5G62410 TTN3, ATSMC4,... structural maintenance of chromosomes 2 0.12 OrthoFinder output from all 47 species
Adi_g117141 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.02 OrthoFinder output from all 47 species
Ala_g23199 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.06 OrthoFinder output from all 47 species
Als_g01195 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.11 OrthoFinder output from all 47 species
Aop_g05581 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.08 OrthoFinder output from all 47 species
Aspi01Gene72499.t1 ATSMC2, Aspi01Gene72499 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.06 OrthoFinder output from all 47 species
Azfi_s0003.g007776 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.05 OrthoFinder output from all 47 species
Ceric.12G044400.1 ATSMC2, Ceric.12G044400 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.17 OrthoFinder output from all 47 species
Ceric.15G020500.1 ATSMC2, Ceric.15G020500 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.13 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000615.55 TTN3, ATSMC4,... Cell cycle.mitosis and meiosis.chromatin... 0.03 OrthoFinder output from all 47 species
Cre02.g086650 ATSMC2 Cell cycle.mitosis and meiosis.chromatin... 0.05 OrthoFinder output from all 47 species
Dac_g14763 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.06 OrthoFinder output from all 47 species
Dcu_g03186 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.14 OrthoFinder output from all 47 species
GSVIVT01018715001 ATSMC2 Cell cycle.mitosis and meiosis.chromatin... 0.13 OrthoFinder output from all 47 species
Gb_17843 ATSMC2 component CAP-E2/SMC2 of condensin I/II complex 0.18 OrthoFinder output from all 47 species
LOC_Os01g67740.1 ATSMC2, LOC_Os01g67740 component CAP-E2/SMC2 of condensin I/II complex 0.04 OrthoFinder output from all 47 species
Len_g12256 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.05 OrthoFinder output from all 47 species
Lfl_g37430 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.04 OrthoFinder output from all 47 species
Mp1g04330.1 ATSMC2 component CAP-E2/SMC2 of condensin I/II complex 0.09 OrthoFinder output from all 47 species
Msp_g14469 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.08 OrthoFinder output from all 47 species
Nbi_g02470 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.11 OrthoFinder output from all 47 species
Ppi_g29913 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0197.g025517 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.03 OrthoFinder output from all 47 species
Sam_g14601 No alias component *(CAP-E2/SMC2) of condensin I/II complex &... 0.07 OrthoFinder output from all 47 species
Smo137981 ATSMC2 Cell cycle.mitosis and meiosis.chromatin... 0.04 OrthoFinder output from all 47 species
Solyc03g093250.2.1 ATSMC2, Solyc03g093250 component CAP-E2/SMC2 of condensin I/II complex 0.11 OrthoFinder output from all 47 species
Solyc03g093260.3.1 ATSMC2, Solyc03g093260 component CAP-E2/SMC2 of condensin I/II complex 0.08 OrthoFinder output from all 47 species
Spa_g41237 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.06 OrthoFinder output from all 47 species
Tin_g10631 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.1 OrthoFinder output from all 47 species
Zm00001e018930_P001 ATSMC2, Zm00001e018930 component CAP-E2/SMC2 of condensin I/II complex 0.15 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0051276 chromosome organization IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR010935 SMC_hinge 518 621
IPR003395 RecF/RecN/SMC_N 2 256
IPR001357 BRCT_dom 645 708
No external refs found!