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  5. MA_13648g0020

MA_13648g0020 (GTB1)


Aliases : GTB1

Description : histone chaperone (SPT6). component SPT6 of SPT6-IWS1 transcription elongation complex


Gene families : OG0001807 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001807_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_13648g0020
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00136890 GTB1,... Chromatin organisation.histone chaperone... 0.05 OrthoFinder output from all 47 species
AT1G65440 GTB1 global transcription factor group B1 0.08 OrthoFinder output from all 47 species
Adi_g055496 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.02 OrthoFinder output from all 47 species
Adi_g060511 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Aev_g43821 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.02 OrthoFinder output from all 47 species
Ala_g25347 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.06 OrthoFinder output from all 47 species
Ala_g37718 No alias component *(SPT6) of SPT6-IWS1 transcription elongation... 0.04 OrthoFinder output from all 47 species
Als_g61446 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Aob_g17694 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Aob_g20381 No alias component *(SPT6) of SPT6-IWS1 transcription elongation... 0.02 OrthoFinder output from all 47 species
Aop_g31491 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Azfi_s0254.g060416 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.02 OrthoFinder output from all 47 species
Ceric.21G005900.1 GTB1, Ceric.21G005900 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.06 OrthoFinder output from all 47 species
Ceric.30G057400.1 Ceric.30G057400 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001486.8 GTB1 Chromatin organisation.histone chaperone... 0.02 OrthoFinder output from all 47 species
Cre09.g403182 GTB1 Chromatin organisation.histone chaperone... 0.04 OrthoFinder output from all 47 species
Dcu_g14255 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.07 OrthoFinder output from all 47 species
Ehy_g23609 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01025815001 GTB1 Chromatin organisation.histone chaperone... 0.06 OrthoFinder output from all 47 species
Gb_29261 GTB1 histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.03 OrthoFinder output from all 47 species
LOC_Os05g41510.1 GTB1, LOC_Os05g41510 histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.05 OrthoFinder output from all 47 species
Len_g19196 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.07 OrthoFinder output from all 47 species
Lfl_g05758 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.05 OrthoFinder output from all 47 species
Mp2g25720.1 GTB1 histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.08 OrthoFinder output from all 47 species
Msp_g43712 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Nbi_g05486 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.07 OrthoFinder output from all 47 species
Ore_g08934 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.04 OrthoFinder output from all 47 species
Pir_g03432 No alias component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Ppi_g31322 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.02 OrthoFinder output from all 47 species
Sam_g13993 No alias component *(SPT6) of SPT6-IWS1 transcription elongation... 0.05 OrthoFinder output from all 47 species
Smo164675 GTB1 Chromatin organisation.histone chaperone... 0.04 OrthoFinder output from all 47 species
Solyc10g081020.2.1 GTB1, Solyc10g081020 histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.06 OrthoFinder output from all 47 species
Spa_g16432 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Tin_g02913 GTB1 component *(SPT6) of SPT6-IWS1 transcription elongation... 0.06 OrthoFinder output from all 47 species
Zm00001e032018_P003 GTB1, Zm00001e032018 histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
InterPro domains Description Start Stop
IPR028231 Spt6_YqgF 753 905
IPR028083 Spt6_acidic_N_dom 38 132
IPR041692 HHH_9 1025 1110
IPR028088 Spt6_HTH_DNA-bd_dom 322 442
IPR035420 Spt6_SH2 1239 1292
IPR032706 Spt6_HHH 909 1011
No external refs found!