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  5. MA_12554g0020

MA_12554g0020


Description : Probable polygalacturonase OS=Vitis vinifera (sp|a7pzl3|pglr_vitvi : 139.0)


Gene families : OG0000312 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000312_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_12554g0020

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00141260 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 OrthoFinder output from all 47 species
AMTR_s00045p00118570 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 OrthoFinder output from all 47 species
AT2G23900 No alias Pectin lyase-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G23820 No alias Pectin lyase-like superfamily protein 0.02 OrthoFinder output from all 47 species
Ala_g01615 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g29621 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g05796 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g09567 No alias EC_3.2 glycosylase & original description: none 0.07 OrthoFinder output from all 47 species
GSVIVT01019405001 No alias Probable polygalacturonase OS=Vitis vinifera 0.04 OrthoFinder output from all 47 species
GSVIVT01019516001 No alias Probable polygalacturonase OS=Vitis vinifera 0.03 OrthoFinder output from all 47 species
Len_g07468 No alias EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Len_g23995 No alias EC_3.2 glycosylase & original description: none 0.05 OrthoFinder output from all 47 species
Len_g38938 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Len_g59151 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g25298 No alias EC_3.2 glycosylase & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g38310 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
MA_98717g0010 No alias Probable polygalacturonase OS=Vitis vinifera... 0.05 OrthoFinder output from all 47 species
Nbi_g03615 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g09024 No alias EC_3.2 glycosylase & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g18897 No alias EC_3.2 glycosylase & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g31037 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g18141 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Smo78556 No alias Probable polygalacturonase OS=Vitis vinifera 0.03 OrthoFinder output from all 47 species
Solyc07g042160.3.1 Solyc07g042160 Probable polygalacturonase OS=Vitis vinifera... 0.04 OrthoFinder output from all 47 species
Tin_g24209 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e021051_P001 Zm00001e021051 Probable polygalacturonase OS=Vitis vinifera... 0.04 OrthoFinder output from all 47 species
Zm00001e026646_P002 Zm00001e026646 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e029809_P002 Zm00001e029809 Probable polygalacturonase OS=Vitis vinifera... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
InterPro domains Description Start Stop
IPR024535 Pectate_lyase_SF_prot 59 142
No external refs found!