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  5. MA_119546g0010

MA_119546g0010 (AGD2)


Aliases : AGD2

Description : Probable LL-diaminopimelate aminotransferase, chloroplastic OS=Oryza sativa subsp. japonica (sp|q10mq2|dapat_orysj : 287.0)


Gene families : OG0001991 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001991_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_119546g0010
Cluster HCCA: Cluster_98

Target Alias Description ECC score Gene Family Method Actions
AT4G33680 AGD2 Pyridoxal phosphate (PLP)-dependent transferases... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020537.26 AGD2 Probable LL-diaminopimelate aminotransferase,... 0.01 OrthoFinder output from all 47 species
Cre17.g734200 AGD2 Amino acid metabolism.biosynthesis.aspartate... 0.03 OrthoFinder output from all 47 species
Nbi_g06161 AGD2 LL-diaminopimelate aminotransferase & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005240 AGD2 not classified & original description: CDS=104-1486 0.02 OrthoFinder output from all 47 species
Sam_g29299 No alias LL-diaminopimelate aminotransferase & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g13147 AGD2 LL-diaminopimelate aminotransferase & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0009058 biosynthetic process IEA Interproscan
MF GO:0030170 pyridoxal phosphate binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006553 lysine metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009085 lysine biosynthetic process IEP HCCA
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046451 diaminopimelate metabolic process IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004839 Aminotransferase_I/II 28 186
No external refs found!