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  5. MA_10437227g0020

MA_10437227g0020


Description : pectate lyase


Gene families : OG0000492 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000492_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10437227g0020
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00186640 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.02 OrthoFinder output from all 47 species
AT3G07010 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT3G24230 No alias Pectate lyase family protein 0.03 OrthoFinder output from all 47 species
AT5G48900 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G55720 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
Aev_g19777 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Als_g10720 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g65574 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene12080.t1 Aspi01Gene12080 EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44683.t1 Aspi01Gene44683 EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.32G027600.1 Ceric.32G027600 EC_4.2 carbon-oxygen lyase & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g43847 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g46389 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01003984001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 OrthoFinder output from all 47 species
GSVIVT01014682001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 OrthoFinder output from all 47 species
GSVIVT01024239001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 OrthoFinder output from all 47 species
GSVIVT01028548001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.04 OrthoFinder output from all 47 species
MA_101171g0010 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_10205415g0010 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_103716g0010 No alias pectate lyase 0.05 OrthoFinder output from all 47 species
MA_10426822g0020 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_10430145g0030 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_10433252g0020 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_1164682g0010 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_474372g0010 No alias pectate lyase 0.02 OrthoFinder output from all 47 species
MA_91467g0010 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_91467g0020 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
MA_928735g0010 No alias pectate lyase 0.02 OrthoFinder output from all 47 species
MA_97947g0010 No alias pectate lyase 0.03 OrthoFinder output from all 47 species
Mp8g00770.1 No alias pectate lyase 0.02 OrthoFinder output from all 47 species
Nbi_g04193 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g06396 No alias EC_4.2 carbon-oxygen lyase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003136 No alias EC_4.2 carbon-oxygen lyase & original description: CDS=1-1299 0.03 OrthoFinder output from all 47 species
Smo407495 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 OrthoFinder output from all 47 species
Solyc05g014000.4.1 Solyc05g014000 pectate lyase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
CC GO:0048046 apoplast IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR002022 Pec_lyase 152 337
No external refs found!