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  5. MA_10437219g0010

MA_10437219g0010


Description : component mtRPL4 of large ribosomal subunit proteome


Gene families : OG0005986 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005986_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10437219g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00101p00151570 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
Ceric.24G005200.1 Ceric.24G005200 component *(uL4m) of large mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Cre12.g520400 No alias No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01004810001 No alias Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
LOC_Os11g37510.1 LOC_Os11g37510 component mtRPL4 of large ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Lfl_g01309 No alias component *(uL4m) of large mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Mp4g00020.1 No alias component mtRPL4 of large ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Nbi_g01874 No alias component *(uL4m) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Pp3c13_15330V3.1 Pp3c13_15330 Ribosomal protein L4/L1 family 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s2504.g028340 No alias not classified & original description: CDS=133-765 0.05 OrthoFinder output from all 47 species
Solyc12g088730.2.1 Solyc12g088730 component mtRPL4 of large ribosomal subunit proteome 0.04 OrthoFinder output from all 47 species
Zm00001e006048_P001 Zm00001e006048 component mtRPL4 of large ribosomal subunit proteome 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR002136 Ribosomal_L4/L1e 129 315
No external refs found!