MA_10437082g0020

Description : component SYF1/MAC9 of non-snRNP MOS4-associated complex

Gene families : OG0005359 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005359_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: MA_10437082g0020

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00060p00216060	evm_27.TU.AmTr_v1...	RNA processing.RNA splicing.spliceosome-associated...	0.02	OrthoFinder output from all 47 species
AT5G28740	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	OrthoFinder output from all 47 species
Adi_g108555	No alias	component *(SYF1/MAC9) of MAC spliceosome-associated...	0.03	OrthoFinder output from all 47 species
Ceric.09G080100.1	Ceric.09G080100	component *(SYF1/MAC9) of MAC spliceosome-associated...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001206.15	No alias	RNA processing.RNA splicing.spliceosome-associated...	0.02	OrthoFinder output from all 47 species
Cre12.g513500	No alias	RNA processing.RNA splicing.spliceosome-associated...	0.03	OrthoFinder output from all 47 species
GSVIVT01006714001	No alias	RNA processing.RNA splicing.spliceosome-associated...	0.06	OrthoFinder output from all 47 species
Gb_19093	No alias	component SYF1/MAC9 of non-snRNP MOS4-associated complex	0.03	OrthoFinder output from all 47 species
LOC_Os07g44970.1	LOC_Os07g44970	component SYF1/MAC9 of non-snRNP MOS4-associated complex	0.02	OrthoFinder output from all 47 species
Mp4g15330.1	No alias	component SYF1/MAC9 of non-snRNP MOS4-associated complex	0.04	OrthoFinder output from all 47 species
Nbi_g10008	No alias	component *(SYF1/MAC9) of MAC spliceosome-associated...	0.02	OrthoFinder output from all 47 species
Ore_g17502	No alias	component *(SYF1/MAC9) of MAC spliceosome-associated...	0.04	OrthoFinder output from all 47 species
Solyc01g086990.3.1	Solyc01g086990	component SYF1/MAC9 of non-snRNP MOS4-associated complex	0.06	OrthoFinder output from all 47 species
Zm00001e010869_P001	Zm00001e010869	component SYF1/MAC9 of non-snRNP MOS4-associated complex	0.04	OrthoFinder output from all 47 species
Zm00001e035711_P001	Zm00001e035711	component SYF1/MAC9 of non-snRNP MOS4-associated complex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0019899	enzyme binding	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
CC	GO:0030120	vesicle coat	IEP	HCCA
CC	GO:0030127	COPII vesicle coat	IEP	HCCA
BP	GO:0031047	RNA-mediated gene silencing	IEP	HCCA
MF	GO:0031625	ubiquitin protein ligase binding	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR008847	Suf	542	698

External Links

No external refs found!

MA_10437082g0020

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation