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  5. MA_10437077g0010

MA_10437077g0010 (RNR1, ATMTRNASEII, EMB2730)


Aliases : RNR1, ATMTRNASEII, EMB2730

Description : exoribonuclease (RNase R)


Gene families : OG0003116 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003116_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10437077g0010

Target Alias Description ECC score Gene Family Method Actions
Adi_g084390 RNR1,... exoribonuclease *(RNase R) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g22996 RNR1,... exoribonuclease *(RNase R) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0076.g037820 RNR1,... exoribonuclease *(RNase R) & original description: CDS=121-2559 0.05 OrthoFinder output from all 47 species
Ceric.12G013800.1 RNR1,... exoribonuclease *(RNase R) & original description:... 0.03 OrthoFinder output from all 47 species
Cre12.g500650 RNR1,... RNA processing.organelle machineries.ribonuclease... 0.01 OrthoFinder output from all 47 species
Dde_g42353 RNR1,... exoribonuclease *(RNase R) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01034161001 RNR1,... RNA processing.organelle machineries.ribonuclease... 0.04 OrthoFinder output from all 47 species
Gb_33852 RNR1,... exoribonuclease (RNase R) 0.04 OrthoFinder output from all 47 species
Gb_33853 RNR1,... exoribonuclease (RNase R) 0.04 OrthoFinder output from all 47 species
Len_g24705 RNR1,... exoribonuclease *(RNase R) & original description: none 0.04 OrthoFinder output from all 47 species
Mp3g07060.1 RNR1,... exoribonuclease (RNase R) 0.03 OrthoFinder output from all 47 species
Msp_g26128 RNR1,... exoribonuclease *(RNase R) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g25156 RNR1,... exoribonuclease *(RNase R) & original description: none 0.07 OrthoFinder output from all 47 species
Smo145357 RNR1,... RNA processing.organelle machineries.ribonuclease... 0.03 OrthoFinder output from all 47 species
Solyc09g010870.4.1 RNR1,... exoribonuclease (RNase R) 0.07 OrthoFinder output from all 47 species
Spa_g12495 RNR1,... exoribonuclease *(RNase R) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004540 ribonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000272 polysaccharide catabolic process IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001900 RNase_II/R 416 711
No external refs found!