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  5. MA_10436494g0010

MA_10436494g0010 (XPB1, ATXPB1)


Aliases : XPB1, ATXPB1

Description : subunit SSL2/XPB of multifunctional TFIIh complex. component SSL2/XPB of TFIIh basal transcription factor complex


Gene families : OG0003291 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003291_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10436494g0010

Target Alias Description ECC score Gene Family Method Actions
Ala_g21273 XPB1, ATXPB1 component *(SSL2/XPB) of TFIIh basal transcription... 0.02 OrthoFinder output from all 47 species
Als_g20947 XPB1, ATXPB1 component *(SSL2/XPB) of TFIIh basal transcription... 0.03 OrthoFinder output from all 47 species
Ceric.07G025300.1 XPB1, ATXPB1,... component *(SSL2/XPB) of TFIIh basal transcription... 0.03 OrthoFinder output from all 47 species
Dcu_g33731 XPB1, ATXPB1 component *(SSL2/XPB) of TFIIh basal transcription... 0.02 OrthoFinder output from all 47 species
GSVIVT01019392001 XPB1, ATXPB1 RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder output from all 47 species
LOC_Os01g49680.1 XPB1, ATXPB1,... subunit SSL2/XPB of multifunctional TFIIh complex.... 0.03 OrthoFinder output from all 47 species
Lfl_g38242 XPB1, ATXPB1 component *(SSL2/XPB) of TFIIh basal transcription... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0032.g010945 XPB1, ATXPB1 component *(SSL2/XPB) of TFIIh basal transcription... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016787 hydrolase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0010921 regulation of phosphatase activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0019220 regulation of phosphate metabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0019902 phosphatase binding IEP HCCA
MF GO:0019903 protein phosphatase binding IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0035303 regulation of dephosphorylation IEP HCCA
BP GO:0035304 regulation of protein dephosphorylation IEP HCCA
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0051174 regulation of phosphorus metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051336 regulation of hydrolase activity IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
InterPro domains Description Start Stop
IPR006935 Helicase/UvrB_N 15 154
IPR032438 ERCC3_RAD25_C 180 216
No external refs found!