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MA_10436273g0010 (SMD1, RDR2)


Aliases : SMD1, RDR2

Description : RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana (sp|o82504|rdr2_arath : 714.0)


Gene families : OG0001039 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001039_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10436273g0010

Target Alias Description ECC score Gene Family Method Actions
AT4G11130 SMD1, RDR2 RNA-dependent RNA polymerase 2 0.05 OrthoFinder output from all 47 species
Aev_g18083 SMD1, RDR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g23245 ATRDRP1, RDR1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01011643001 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Gb_12327 SDE1, RDR6, SGS2 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003968 RNA-dependent RNA polymerase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR007855 RNA-dep_RNA_pol_euk-typ 578 823
IPR007855 RNA-dep_RNA_pol_euk-typ 375 578
No external refs found!