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  5. MA_10436248g0010

MA_10436248g0010


Description : DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa subsp. japonica (sp|a3avh5|rh13_orysj : 417.0)


Gene families : OG0005853 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005853_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10436248g0010

Target Alias Description ECC score Gene Family Method Actions
AT3G16840 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 OrthoFinder output from all 47 species
Aop_g36186 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.13G087700.1 Ceric.13G087700 not classified & original description: pacid=50636878... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020943.85 No alias DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Cre01.g022350 No alias DEAD-box ATP-dependent RNA helicase 13 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Dcu_g01929 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01027957001 No alias DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Gb_06963 No alias DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Solyc09g090740.4.1 Solyc09g090740 DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species
Zm00001e007582_P001 Zm00001e007582 DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
MF GO:0005047 signal recognition particle binding IEP HCCA
MF GO:0005048 signal sequence binding IEP HCCA
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
MF GO:0042277 peptide binding IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 4 115
IPR001650 Helicase_C 181 289
No external refs found!