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  5. MA_10434955g0010

MA_10434955g0010 (EMB976)


Aliases : EMB976

Description : Pentatricopeptide repeat-containing protein At5g27270 OS=Arabidopsis thaliana (sp|o04647|pp399_arath : 457.0)


Gene families : OG0007469 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007469_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10434955g0010
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00132600 EMB976,... Pentatricopeptide repeat-containing protein At5g27270... 0.03 OrthoFinder output from all 47 species
AT5G27270 EMB976 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g059643 EMB976 plastidial splicing factor *(PDM4) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g13289 EMB976 plastidial splicing factor *(PDM4) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.11G008200.1 EMB976, Ceric.11G008200 plastidial splicing factor *(PDM4) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g11292 EMB976 plastidial splicing factor *(PDM4) & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os06g02120.1 EMB976, LOC_Os06g02120 Pentatricopeptide repeat-containing protein At5g27270... 0.04 OrthoFinder output from all 47 species
Smo110655 EMB976 Pentatricopeptide repeat-containing protein At5g27270... 0.02 OrthoFinder output from all 47 species
Spa_g06898 EMB976 plastidial splicing factor *(PDM4) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0004743 pyruvate kinase activity IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
MF GO:0030955 potassium ion binding IEP HCCA
MF GO:0031420 alkali metal ion binding IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 329 356
IPR002885 Pentatricopeptide_repeat 292 320
IPR002885 Pentatricopeptide_repeat 13 43
IPR002885 Pentatricopeptide_repeat 365 387
IPR002885 Pentatricopeptide_repeat 49 77
IPR002885 Pentatricopeptide_repeat 430 456
IPR002885 Pentatricopeptide_repeat 83 126
IPR002885 Pentatricopeptide_repeat 496 540
IPR033443 PPR_long 135 268
No external refs found!