MA_10434304g0010


Description : cohesin cofactor (PDS5)


Gene families : OG0000616 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000616_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10434304g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00065p00174980 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.sister chromatid... 0.03 OrthoFinder output from all 47 species
AT1G15940 No alias Tudor/PWWP/MBT superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G47690 No alias binding 0.03 OrthoFinder output from all 47 species
Adi_g022401 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g045350 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g117140 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g32765 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g07435 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08128 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g04527 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.11G037000.1 Ceric.11G037000 cohesin cofactor *(PDS5) & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.34G009800.1 Ceric.34G009800 cohesin cofactor *(PDS5) & original description:... 0.04 OrthoFinder output from all 47 species
Dcu_g36421 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g10056 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01035890001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.04 OrthoFinder output from all 47 species
Gb_09525 No alias cohesin cofactor (PDS5) 0.03 OrthoFinder output from all 47 species
Gb_23673 No alias cohesin cofactor (PDS5) 0.04 OrthoFinder output from all 47 species
LOC_Os02g39920.1 LOC_Os02g39920 cohesin cofactor (PDS5) 0.02 OrthoFinder output from all 47 species
LOC_Os06g17840.1 LOC_Os06g17840 cohesin cofactor (PDS5) 0.02 OrthoFinder output from all 47 species
Lfl_g09667 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g10229 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g18717 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g14289 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g20541 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g36032 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0105.g020186 No alias exoribonuclease *(SOV) & original description: CDS=109-2307 0.03 OrthoFinder output from all 47 species
Sam_g14013 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g18018 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24524 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc11g012770.2.1 Solyc11g012770 cohesin cofactor (PDS5) 0.03 OrthoFinder output from all 47 species
Spa_g18111 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e015094_P002 Zm00001e015094 cohesin cofactor (PDS5) 0.02 OrthoFinder output from all 47 species
Zm00001e030989_P001 Zm00001e030989 cohesin cofactor (PDS5) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA

No InterPro domains available for this sequence

No external refs found!