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  5. MA_10432371g0010

MA_10432371g0010 (CHB3, ATSWI3D)


Aliases : CHB3, ATSWI3D

Description : component BAF255/170 of chromatin remodeling complex


Gene families : OG0000817 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000817_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10432371g0010

Target Alias Description ECC score Gene Family Method Actions
AT4G34430 CHB3, ATSWI3D DNA-binding family protein 0.03 OrthoFinder output from all 47 species
Adi_g003357 CHB4, SWI3C, ATSWI3C SMARCC component *(SWI3) of chromatin remodeling complex... 0.02 OrthoFinder output from all 47 species
Adi_g049733 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g055176 SWI3A, CHB1, ATSWI3A SMARCC component *(SWI3) of chromatin remodeling complex... 0.02 OrthoFinder output from all 47 species
Aob_g20656 CHB4, SWI3C, ATSWI3C SMARCC component *(SWI3) of chromatin remodeling complex... 0.02 OrthoFinder output from all 47 species
Aop_g08555 CHB4, SWI3C, ATSWI3C SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Cba_g02046 SWI3A, CHB1, ATSWI3A SMARCC component *(SWI3) of chromatin remodeling complex... 0.02 OrthoFinder output from all 47 species
Ceric.03G090000.1 CHB4, SWI3C,... SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Ceric.17G074300.1 CHB3, ATSWI3D,... SMARCC component *(SWI3) of chromatin remodeling complex... 0.02 OrthoFinder output from all 47 species
Ceric.18G048000.1 SWI3A, CHB1,... SMARCC component *(SWI3) of chromatin remodeling complex... 0.05 OrthoFinder output from all 47 species
Ehy_g16559 CHB3, ATSWI3D SMARCC component *(SWI3) of chromatin remodeling complex... 0.02 OrthoFinder output from all 47 species
LOC_Os04g40420.1 SWI3A, CHB1,... component BAF255/170 of chromatin remodeling complex 0.05 OrthoFinder output from all 47 species
LOC_Os12g07730.1 CHB4, SWI3C,... component BAF255/170 of chromatin remodeling complex 0.04 OrthoFinder output from all 47 species
Len_g07560 CHB3, ATSWI3D SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Mp8g15610.1 SWI3A, CHB1, ATSWI3A component BAF255/170 of chromatin remodeling complex 0.02 OrthoFinder output from all 47 species
Pir_g10930 CHB4, SWI3C, ATSWI3C SMARCC component *(SWI3) of chromatin remodeling complex... 0.02 OrthoFinder output from all 47 species
Pnu_g27615 CHB4, SWI3C, ATSWI3C SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Ppi_g01335 CHB3, ATSWI3D SMARCC component *(SWI3) of chromatin remodeling complex... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0127.g021843 CHB4, SWI3C, ATSWI3C SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Sam_g07213 No alias SMARCC component *(SWI3) of chromatin remodeling complex... 0.03 OrthoFinder output from all 47 species
Spa_g06724 SWI3A, CHB1, ATSWI3A SMARCC component *(SWI3) of chromatin remodeling complex... 0.02 OrthoFinder output from all 47 species
Spa_g15980 SWI3A, CHB1, ATSWI3A SMARCC component *(SWI3) of chromatin remodeling complex... 0.04 OrthoFinder output from all 47 species
Zm00001e018409_P001 CHB4, SWI3C,... component BAF255/170 of chromatin remodeling complex 0.03 OrthoFinder output from all 47 species
Zm00001e024548_P001 CHB4, SWI3C,... component BAF255/170 of chromatin remodeling complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005096 GTPase activator activity IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
MF GO:0008047 enzyme activator activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
InterPro domains Description Start Stop
IPR007526 SWIRM 150 235
IPR032451 SMARCC_C 404 465
IPR001005 SANT/Myb 381 408
IPR000433 Znf_ZZ 322 354
No external refs found!