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  5. MA_10393806g0010

MA_10393806g0010 (RPA70B, ATRPA70B)


Aliases : RPA70B, ATRPA70B

Description : Replication protein A 70 kDa DNA-binding subunit B OS=Oryza sativa subsp. japonica (sp|q10q08|rfa1b_orysj : 161.0)


Gene families : OG0003997 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003997_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10393806g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00154p00046110 RPA70B,... Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.05 OrthoFinder output from all 47 species
AT5G08020 RPA70B, ATRPA70B RPA70-kDa subunit B 0.05 OrthoFinder output from all 47 species
AT5G61000 RPA70D, ATRPA70D Replication factor-A protein 1-related 0.03 OrthoFinder output from all 47 species
Als_g08320 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.02 OrthoFinder output from all 47 species
Aop_g21131 RPA70B, ATRPA70B component *(RPA1) of RPA presynaptic filament assembly... 0.02 OrthoFinder output from all 47 species
Ceric.18G083500.1 RPA70B,... component *(RPA1) of RPA presynaptic filament assembly... 0.06 OrthoFinder output from all 47 species
Cre16.g651000 RPA70D, ATRPA70D Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.02 OrthoFinder output from all 47 species
Dac_g20470 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.03 OrthoFinder output from all 47 species
Dcu_g11388 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.03 OrthoFinder output from all 47 species
GSVIVT01007849001 RPA70B, ATRPA70B Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.05 OrthoFinder output from all 47 species
Gb_17349 RPA70B, ATRPA70B component RPA1 of single-stranded-DNA binding RPA... 0.04 OrthoFinder output from all 47 species
LOC_Os03g11540.1 RPA70B,... component RPA1 of single-stranded-DNA binding RPA... 0.03 OrthoFinder output from all 47 species
MA_10318162g0020 RPA70B, ATRPA70B Replication protein A 70 kDa DNA-binding subunit B... 0.03 OrthoFinder output from all 47 species
MA_10327014g0020 RPA70B, ATRPA70B component RPA1 of RPA presynaptic filament assembly... 0.05 OrthoFinder output from all 47 species
MA_10331305g0010 RPA70B, ATRPA70B component RPA1 of RPA presynaptic filament assembly... 0.05 OrthoFinder output from all 47 species
Mp2g17030.1 RPA70D, ATRPA70D component RPA1 of single-stranded-DNA binding RPA... 0.04 OrthoFinder output from all 47 species
Nbi_g08948 RPA70B, ATRPA70B component *(RPA1) of RPA presynaptic filament assembly... 0.03 OrthoFinder output from all 47 species
Solyc03g115050.3.1 RPA70B,... component RPA1 of single-stranded-DNA binding RPA... 0.04 OrthoFinder output from all 47 species
Spa_g41654 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.03 OrthoFinder output from all 47 species
Tin_g07108 RPA70D, ATRPA70D component *(RPA1) of RPA presynaptic filament assembly... 0.05 OrthoFinder output from all 47 species
Zm00001e000841_P002 RPA70B,... component RPA1 of single-stranded-DNA binding RPA... 0.02 OrthoFinder output from all 47 species
Zm00001e038720_P001 RPA70B,... component RPA1 of single-stranded-DNA binding RPA... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR031657 REPA_OB_2 9 53
IPR013955 Rep_factor-A_C 117 172
No external refs found!