Pp3s62_10V3.1 (Pp3s62_10)

Aliases : Pp3s62_10

Description : RNA helicase family protein

Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3s62_10V3.1
Cluster	HCCA: Cluster_127

Target	Alias	Description	ECC score	Gene Family Method
Adi_g008220	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g107992	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0033.g025048	No alias	not classified & original description: CDS=1403-2254	0.01	OrthoFinder output from all 47 species
Azfi_s0237.g059557	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.02	OrthoFinder output from all 47 species
Ppi_g14114	No alias	RNA helicase *(Prp22) & original description: none	0.01	OrthoFinder output from all 47 species
Sam_g48742	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	261	392
IPR007502	Helicase-assoc_dom	455	543
IPR011545	DEAD/DEAH_box_helicase_dom	62	214

External Links

No external refs found!