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  5. Pp3s128_50V3.1

Pp3s128_50V3.1 (LOS1, Pp3s128_50)


Aliases : LOS1, Pp3s128_50

Description : Ribosomal protein S5/Elongation factor G/III/V family protein


Gene families : OG0001393 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001393_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3s128_50V3.1
Cluster HCCA: Cluster_127

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00032p00133570 LOS1,... Protein biosynthesis.translation elongation.eEF2... 0.01 OrthoFinder output from all 47 species
Adi_g109900 LOS1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g06118 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g70105 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g36461 LOS1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.25G007600.1 LOS1, Ceric.25G007600 mRNA-translocation factor *(eEF2)) & original... 0.05 OrthoFinder output from all 47 species
LOC_Os02g32030.1 LOS1, LOC_Os02g32030 mRNA-translocation factor (eEF2) 0.02 OrthoFinder output from all 47 species
Lfl_g12274 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g08640 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g13540 LOS1 mRNA-translocation factor *(eEF2)) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g32430 LOS1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0027.g009688 LOS1 mRNA-translocation factor *(eEF2)) & original... 0.03 OrthoFinder output from all 47 species
Smo411087 LOS1 Protein biosynthesis.translation elongation.eEF2... 0.01 OrthoFinder output from all 47 species
Solyc08g062910.4.1 LOS1, Solyc08g062910 mRNA-translocation factor (eEF2) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004478 methionine adenosyltransferase activity IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046500 S-adenosylmethionine metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR000640 EFG_V-like 724 811
IPR041095 EFG_II 487 549
IPR004161 EFTu-like_2 394 467
IPR000795 T_Tr_GTP-bd_dom 17 342
IPR005517 Transl_elong_EFG/EF2_IV 611 722
No external refs found!