Pp3c7_1950V3.1 (LOS1, Pp3c7_1950)

Aliases : LOS1, Pp3c7_1950

Description : Ribosomal protein S5/Elongation factor G/III/V family protein

Gene families : OG0001393 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001393_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c7_1950V3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00032p00133570	LOS1,...	Protein biosynthesis.translation elongation.eEF2...	0.02	OrthoFinder output from all 47 species
AT1G56070	LOS1	Ribosomal protein S5/Elongation factor G/III/V family protein	0.04	OrthoFinder output from all 47 species
Adi_g060675	LOS1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g17437	LOS1	mRNA-translocation factor *(eEF2)) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g14719	LOS1	mRNA-translocation factor *(eEF2)) & original description: none	0.01	OrthoFinder output from all 47 species
Azfi_s0796.g087282	LOS1	mRNA-translocation factor *(eEF2)) & original...	0.03	OrthoFinder output from all 47 species
Cba_g22337	LOS1	mRNA-translocation factor *(eEF2)) & original description: none	0.01	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021464.39	LOS1	Protein biosynthesis.translation elongation.eEF2...	0.01	OrthoFinder output from all 47 species
Cre12.g516200	LOS1	Protein biosynthesis.translation elongation.eEF2...	0.02	OrthoFinder output from all 47 species
Gb_14897	LOS1	mRNA-translocation factor (eEF2)	0.01	OrthoFinder output from all 47 species
MA_10426758g0010	LOS1	transcription factor (TUB)	0.02	OrthoFinder output from all 47 species
Mp2g20190.1	LOS1	mRNA-translocation factor (eEF2)	0.02	OrthoFinder output from all 47 species
Mp2g20200.1	LOS1	mRNA-translocation factor (eEF2)	0.02	OrthoFinder output from all 47 species
Pp3c11_25350V3.1	LOS1, Pp3c11_25350	Ribosomal protein S5/Elongation factor G/III/V family protein	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0080.g017954	LOS1	mRNA-translocation factor *(eEF2)) & original...	0.01	OrthoFinder output from all 47 species
Sam_g38282	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g49446	No alias	mRNA-translocation factor *(eEF2)) & original description: none	0.01	OrthoFinder output from all 47 species
Solyc08g062920.3.1	LOS1, Solyc08g062920	mRNA-translocation factor (eEF2)	0.06	OrthoFinder output from all 47 species
Spa_g30071	LOS1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e006293_P001	LOS1, Zm00001e006293	mRNA-translocation factor (eEF2)	0.02	OrthoFinder output from all 47 species
Zm00001e006294_P001	LOS1, Zm00001e006294	mRNA-translocation factor (eEF2)	0.02	OrthoFinder output from all 47 species
Zm00001e029078_P002	LOS1, Zm00001e029078	mRNA-translocation factor (eEF2)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0008150	biological_process	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
MF	GO:0031369	translation initiation factor binding	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000640	EFG_V-like	724	811
IPR041095	EFG_II	487	549
IPR004161	EFTu-like_2	394	467
IPR000795	T_Tr_GTP-bd_dom	17	342
IPR005517	Transl_elong_EFG/EF2_IV	611	722

External Links

No external refs found!

Pp3c7_1950V3.1 (LOS1, Pp3c7_1950)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation