1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp3c5_810V3.1

Pp3c5_810V3.1 (Pp3c5_810)


Aliases : Pp3c5_810

Description : Integrase-type DNA-binding superfamily protein


Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c5_810V3.1
Cluster HCCA: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00058p00066390 RAP2.11,... External stimuli response.biotic... 0.01 OrthoFinder output from all 47 species
AMTR_s00068p00102110 RAP2.11,... External stimuli response.biotic... 0.01 OrthoFinder output from all 47 species
AT1G15360 WIN1, SHN1 Integrase-type DNA-binding superfamily protein 0.01 OrthoFinder output from all 47 species
AT1G46768 RAP2.1 related to AP2 1 0.01 OrthoFinder output from all 47 species
AT2G25820 No alias Integrase-type DNA-binding superfamily protein 0.02 OrthoFinder output from all 47 species
AT3G15210 ATERF4, RAP2.5,... ethylene responsive element binding factor 4 0.02 OrthoFinder output from all 47 species
AT4G27950 CRF4 cytokinin response factor 4 0.01 OrthoFinder output from all 47 species
AT4G36900 DEAR4, RAP2.10 related to AP2 10 0.01 OrthoFinder output from all 47 species
AT5G47230 ERF5, ATERF-5, ATERF5 ethylene responsive element binding factor 5 0.01 OrthoFinder output from all 47 species
Adi_g045252 ATERF12, ERF12 subgroup ERF-VIII transcription factor & original... 0.02 OrthoFinder output from all 47 species
Aev_g03062 DREB26 subgroup ERF-II transcription factor *(ERF16/17/18) &... 0.02 OrthoFinder output from all 47 species
Aev_g41268 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g20736 ATERF-9, ERF9, ATERF9 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g51423 HRE2 subgroup ERF-VI transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g08822 ATERF-9, ERF9, ATERF9 subgroup ERF-VIII transcription factor & original... 0.01 OrthoFinder output from all 47 species
Aop_g58325 RRTF1 subgroup ERF-X transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene05372.t1 DEAR3, Aspi01Gene05372 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene05675.t1 Aspi01Gene05675 subgroup ERF-III transcription factor & original... 0.01 OrthoFinder output from all 47 species
Aspi01Gene34430.t1 ATERF4, RAP2.5,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene37118.t1 Aspi01Gene37118 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene53898.t1 Aspi01Gene53898 subgroup ERF-II transcription factor *(ERF16/17/18) &... 0.01 OrthoFinder output from all 47 species
Aspi01Gene53899.t1 Aspi01Gene53899 subgroup ERF-II transcription factor *(ERF16/17/18) &... 0.01 OrthoFinder output from all 47 species
Azfi_s0016.g014420 ATERF8, ATERF-8, ERF8 subgroup ERF-VIII transcription factor & original... 0.01 OrthoFinder output from all 47 species
Azfi_s0045.g029841 No alias not classified & original description: CDS=1-2064 0.01 OrthoFinder output from all 47 species
Cba_g06839 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g44548 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.01G088400.1 Ceric.01G088400 subgroup ERF-V transcription factor & original... 0.01 OrthoFinder output from all 47 species
Ceric.08G029900.1 Ceric.08G029900 not classified & original description: pacid=50638924... 0.02 OrthoFinder output from all 47 species
Ceric.10G018900.1 ERF2, ATERF2,... subgroup ERF-VI transcription factor & original... 0.02 OrthoFinder output from all 47 species
Ceric.15G043500.1 HRE2, Ceric.15G043500 transcription factor component *(HRE/RAP2.12) of... 0.01 OrthoFinder output from all 47 species
Ceric.28G035700.1 ATERF8, ATERF-8,... subgroup ERF-VIII transcription factor & original... 0.01 OrthoFinder output from all 47 species
Ceric.29G030500.1 AtERF48, DREB2C,... subgroup ERF-IV/DREB2 transcription factor & original... 0.01 OrthoFinder output from all 47 species
Ceric.35G055900.1 Ceric.35G055900 subgroup ERF-IV/DREB2 transcription factor & original... 0.02 OrthoFinder output from all 47 species
Dcu_g00633 ORA47 subgroup ERF-II transcription factor *(ERF16/17/18) &... 0.02 OrthoFinder output from all 47 species
Dcu_g05268 ATERF3, ERF3 subgroup ERF-VIII transcription factor & original... 0.01 OrthoFinder output from all 47 species
Dcu_g07677 RAP2.2 transcription factor component *(HRE/RAP2.12) of... 0.01 OrthoFinder output from all 47 species
Dcu_g09318 ATERF12, ERF12 subgroup ERF-VIII transcription factor & original... 0.01 OrthoFinder output from all 47 species
Dcu_g10630 DEAR1, CEJ1, ATERF#011 subgroup ERF-II transcription factor *(ERF16/17/18) &... 0.02 OrthoFinder output from all 47 species
Dcu_g16100 No alias subgroup ERF-X transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Dcu_g45973 HRE2 transcription factor component *(HRE/RAP2.12) of... 0.01 OrthoFinder output from all 47 species
GSVIVT01015540001 WIN1, SHN1 Cell wall.cutin and suberin.biosynthesis... 0.01 OrthoFinder output from all 47 species
GSVIVT01035852001 SHN3 RNA biosynthesis.transcriptional activation.AP2/ERF... 0.01 OrthoFinder output from all 47 species
Gb_03368 No alias transcription factor (ERF). SHN-type cutin and suberin... 0.01 OrthoFinder output from all 47 species
Gb_06962 ERF72, EBP, ATEBP, RAP2.3 transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
Gb_34848 ERF-1, ATERF-1 transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
Gb_37188 No alias transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
Gb_41433 No alias transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
LOC_Os02g10760.1 WIN1, SHN1,... transcription factor (ERF). SHN-type cutin and suberin... 0.01 OrthoFinder output from all 47 species
LOC_Os02g42585.1 LOC_Os02g42585 transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
LOC_Os02g43790.1 ERF-1, ATERF-1,... transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
LOC_Os03g22170.1 HRE2, LOC_Os03g22170 transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
LOC_Os04g46220.1 ERF-1, ATERF-1,... transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
LOC_Os04g48350.1 DREB1A, ATCBF3,... Dehydration-responsive element-binding protein 1E... 0.02 OrthoFinder output from all 47 species
LOC_Os04g56150.1 LOC_Os04g56150 transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
LOC_Os05g29810.1 ERF72, EBP,... transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
LOC_Os06g09717.1 LOC_Os06g09717 Ethylene-responsive transcription factor ERF018... 0.01 OrthoFinder output from all 47 species
LOC_Os09g13940.2 LOC_Os09g13940 transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
LOC_Os11g13840.1 tny, LOC_Os11g13840 transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
Len_g31258 DREB26 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g01837 DREB2A, DREB2 subgroup ERF-IV/DREB2 transcription factor & original... 0.01 OrthoFinder output from all 47 species
MA_10020434g0010 No alias Ethylene-responsive transcription factor ERF013... 0.01 OrthoFinder output from all 47 species
MA_164803g0010 tny transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
MA_214063g0010 No alias transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
MA_426919g0030 No alias transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
MA_54341g0010 WIN1, SHN1 transcription factor (ERF). SHN-type cutin and suberin... 0.01 OrthoFinder output from all 47 species
MA_647924g0010 No alias transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
MA_66969g0010 No alias transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
MA_7960347g0010 TMO3, CRF2 transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
MA_88g0020 ORA47 transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
MA_94228g0010 No alias transcription factor (ERF). SHN-type cutin and suberin... 0.02 OrthoFinder output from all 47 species
MA_98464g0010 RAP2.4 Ethylene-responsive transcription factor RAP2-4... 0.01 OrthoFinder output from all 47 species
Mp7g09350.1 ERF-1, ATERF-1 transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
Pir_g42920 RAP2.11 transcription factor *(ERN1) & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g05946 ATERF-9, ERF9, ATERF9 subgroup ERF-VIII transcription factor & original... 0.01 OrthoFinder output from all 47 species
Pnu_g17467 ERF-1, ATERF-1 subgroup ERF-IX transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g31928 HRE2 transcription factor component *(HRE/RAP2.12) of... 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001285 No alias not classified & original description: CDS=1-1830 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006108 No alias not classified & original description: CDS=1-567 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0040.g012398 DEAR1, CEJ1, ATERF#011 not classified & original description: CDS=1-1134 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0066.g016160 ERF-1, ATERF-1 subgroup ERF-IX transcription factor & original... 0.02 OrthoFinder output from all 47 species
Sam_g38211 No alias subgroup ERF-V transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Smo38500 DREB2A, DREB2 RNA biosynthesis.transcriptional activation.AP2/ERF... 0.01 OrthoFinder output from all 47 species
Smo80895 ERF2, ATERF2, ATERF-2 RNA biosynthesis.transcriptional activation.AP2/ERF... 0.02 OrthoFinder output from all 47 species
Solyc01g005630.3.1 RAP2.11, Solyc01g005630 transcription factor (ERF). transcription factor (ERN1) 0.01 OrthoFinder output from all 47 species
Solyc01g008880.3.1 CRF5, Solyc01g008880 transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
Solyc03g006320.1.1 ATERF4, RAP2.5,... transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
Solyc03g093560.1.1 Solyc03g093560 transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
Solyc04g080910.1.1 Solyc04g080910 transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
Solyc05g050790.3.1 ATERF13, ERF13,... transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
Solyc06g082590.1.1 CRF4, Solyc06g082590 transcription factor (ERF) 0.02 OrthoFinder output from all 47 species
Solyc08g078410.2.1 Solyc08g078410 transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
Solyc10g006130.1.1 ATERF3, ERF3,... transcription factor (ERF) 0.01 OrthoFinder output from all 47 species
Spa_g08163 ATERF-9, ERF9, ATERF9 subgroup ERF-VIII transcription factor & original... 0.01 OrthoFinder output from all 47 species
Spa_g09064 DREB2A, DREB2 subgroup ERF-IV/DREB2 transcription factor & original... 0.01 OrthoFinder output from all 47 species
Tin_g30387 ATERF12, ERF12 subgroup ERF-VIII transcription factor & original... 0.01 OrthoFinder output from all 47 species
Zm00001e000611_P001 HRE1, Zm00001e000611 Ethylene-responsive transcription factor ERF073... 0.01 OrthoFinder output from all 47 species
Zm00001e023159_P001 Zm00001e023159 transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
Zm00001e023870_P001 RAP2.4, Zm00001e023870 transcription factor (DREB) 0.01 OrthoFinder output from all 47 species
Zm00001e034661_P001 ERF110, Zm00001e034661 Ethylene-responsive transcription factor ERF115... 0.01 OrthoFinder output from all 47 species
Zm00001e041620_P002 ATERF3, ERF3,... transcription factor (ERF) 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEP HCCA
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 50 97
No external refs found!