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  5. Pp3c4_24900V3.1

Pp3c4_24900V3.1 (Pp3c4_24900)


Aliases : Pp3c4_24900

Description : No annotation


Gene families : OG0002006 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002006_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c4_24900V3.1
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
Nbi_g06298 EMB2780 EC_2.7 transferase transferring phosphorus-containing... 0.01 OrthoFinder output from all 47 species
Pp3c10_25280V3.1 EMB2780, Pp3c10_25280 DNA binding;nucleotide binding;nucleic acid... 0.05 OrthoFinder output from all 47 species
Pp3c13_14630V3.1 EMB2780, Pp3c13_14630 DNA binding;nucleotide binding;nucleic acid... 0.06 OrthoFinder output from all 47 species
Pp3c14_3970V3.1 Pp3c14_3970 No annotation 0.03 OrthoFinder output from all 47 species
Pp3c15_13750V3.1 Pp3c15_13750 DNA binding;nucleotide binding;nucleic acid... 0.04 OrthoFinder output from all 47 species
Pp3c16_6050V3.1 EMB2780, Pp3c16_6050 DNA binding;nucleotide binding;nucleic acid... 0.03 OrthoFinder output from all 47 species
Pp3c1_290V3.1 EMB2780, Pp3c1_290 DNA binding;nucleotide binding;nucleic acid... 0.03 OrthoFinder output from all 47 species
Pp3c25_2990V3.1 EMB2780, Pp3c25_2990 DNA binding;nucleotide binding;nucleic acid... 0.05 OrthoFinder output from all 47 species
Pp3c2_18826V3.1 Pp3c2_18826 DNA binding;nucleotide binding;nucleic acid... 0.02 OrthoFinder output from all 47 species
Pp3c6_15720V3.1 EMB2780, Pp3c6_15720 DNA binding;nucleotide binding;nucleic acid... 0.03 OrthoFinder output from all 47 species
Pp3c9_12701V3.1 EMB2780, Pp3c9_12701 DNA binding;nucleotide binding;nucleic acid... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR006133 DNA-dir_DNA_pol_B_exonuc 2 114
No external refs found!