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  5. Pp3c4_11854V3.1

Pp3c4_11854V3.1 (LHCA5, Pp3c4_11854)


Aliases : LHCA5, Pp3c4_11854

Description : photosystem I light harvesting complex gene 5


Gene families : OG0000742 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000742_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c4_11854V3.1
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00131p00114510 evm_27.TU.AmTr_v1... Photosystem I chlorophyll a/b-binding protein 6,... 0.01 OrthoFinder output from all 47 species
AT1G19150 LHCA2*1, LHCA6 photosystem I light harvesting complex gene 6 0.01 OrthoFinder output from all 47 species
AT1G45474 LHCA5 photosystem I light harvesting complex gene 5 0.01 OrthoFinder output from all 47 species
Aev_g11818 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.03 OrthoFinder output from all 47 species
Ala_g00950 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.03 OrthoFinder output from all 47 species
Ala_g00983 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g21633 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Als_g05433 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Als_g07082 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Als_g39064 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g12147 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g13138 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g06305 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g15852 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g36933 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g21646 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.01 OrthoFinder output from all 47 species
Dcu_g02371 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g09352 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.02 OrthoFinder output from all 47 species
Dcu_g45197 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g02029 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g08226 LHCA5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g20973 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01010483001 LHCA2 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.01 OrthoFinder output from all 47 species
GSVIVT01015045001 LHCA2*1, LHCA6 Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.04 OrthoFinder output from all 47 species
LOC_Os09g26810.1 LOC_Os09g26810 component LHCa6 of LHC-I complex 0.03 OrthoFinder output from all 47 species
Len_g09864 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Len_g12015 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Len_g17260 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g34099 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.02 OrthoFinder output from all 47 species
Msp_g01556 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g04666 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g12268 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g00555 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g00735 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.02 OrthoFinder output from all 47 species
Ore_g07782 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g07783 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g17334 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g19526 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.03 OrthoFinder output from all 47 species
Pir_g19768 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g08290 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g12016 CAB4, LHCA4 component *(LHCa4) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g16001 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.02 OrthoFinder output from all 47 species
Ppi_g18284 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g18948 No alias linker protein *(LHCa5) between PS-I complex and NDH... 0.04 OrthoFinder output from all 47 species
Smo403333 LHCA5 Photosystem I chlorophyll a/b-binding protein 5,... 0.01 OrthoFinder output from all 47 species
Spa_g04946 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g08046 LHCA5 linker protein *(LHCa5) between PS-I complex and NDH... 0.06 OrthoFinder output from all 47 species
Spa_g29531 LHCA2 component *(LHCa2) of LHC-I complex & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e004129_P001 CAB4, LHCA4,... component LHCa4 of LHC-I complex 0.02 OrthoFinder output from all 47 species
Zm00001e009885_P001 LHCA2*1, LHCA6,... component LHCa6 of LHC-I complex 0.04 OrthoFinder output from all 47 species
Zm00001e015945_P001 LHCA5, Zm00001e015945 component LHCa5 of LHC-I complex 0.02 OrthoFinder output from all 47 species
Zm00001e035349_P002 LHCA2, Zm00001e035349 component LHCa2 of LHC-I complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004751 ribose-5-phosphate isomerase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 81 250
No external refs found!