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  5. Pp3c3_24370V3.1

Pp3c3_24370V3.1 (Pp3c3_24370)


Aliases : Pp3c3_24370

Description : AMP-dependent synthetase and ligase family protein


Gene families : OG0000359 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000359_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c3_24370V3.1

Target Alias Description ECC score Gene Family Method Actions
AT5G38120 4CL8 AMP-dependent synthetase and ligase family protein 0.02 OrthoFinder output from all 47 species
Adi_g020210 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g22282 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g17436 OPCL1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene34196.t1 OPCL1, Aspi01Gene34196 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene63195.t1 OPCL1, Aspi01Gene63195 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s1020.g095355 No alias not classified & original description: CDS=69-1760 0.01 OrthoFinder output from all 47 species
Cba_g29974 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g62425 OPCL1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.11G077600.1 Ceric.11G077600 not classified & original description: pacid=50595629... 0.02 OrthoFinder output from all 47 species
Ceric.11G077700.1 Ceric.11G077700 not classified & original description: pacid=50595996... 0.01 OrthoFinder output from all 47 species
Ceric.36G025100.1 OPCL1, Ceric.36G025100 not classified & original description: pacid=50568001... 0.01 OrthoFinder output from all 47 species
Ehy_g04748 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01008694001 OPCL1 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01010358001 No alias 4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Gb_19726 OPCL1 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Gb_33460 OPCL1 OPC-8:CoA synthetase 0.01 OrthoFinder output from all 47 species
LOC_Os01g67540.1 LOC_Os01g67540 4-coumarate--CoA ligase-like 6 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
LOC_Os07g17970.1 LOC_Os07g17970 4-coumarate--CoA ligase-like 7 OS=Oryza sativa subsp.... 0.01 OrthoFinder output from all 47 species
Len_g41515 OPCL1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
MA_103893g0010 OPCL1 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
MA_10922g0010 OPCL1 OPC-8:CoA synthetase 0.01 OrthoFinder output from all 47 species
MA_135674g0010 No alias 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
MA_5g0010 No alias 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
MA_8552247g0010 No alias 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species
Msp_g09388 OPCL1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g13004 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g20427 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g43750 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g04839 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g16468 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g16903 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g32502 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g58318 OPCL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g10259 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g02184 OPCL1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Smo123905 No alias 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Smo177466 OPCL1 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Smo429785 No alias 4-coumarate--CoA ligase-like 1 OS=Oryza sativa subsp. japonica 0.01 OrthoFinder output from all 47 species
Solyc12g094520.2.1 OPCL1, Solyc12g094520 OPC-8:CoA synthetase 0.01 OrthoFinder output from all 47 species
Spa_g05626 OPCL1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Spa_g28398 AT4CL2, 4CL2 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Tin_g07385 OPCL1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e002498_P003 Zm00001e002498 4-coumarate--CoA ligase-like 3 OS=Oryza sativa subsp.... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016843 amine-lyase activity IEP HCCA
MF GO:0016844 strictosidine synthase activity IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
InterPro domains Description Start Stop
IPR000873 AMP-dep_Synth/Lig_com 2 289
IPR000873 AMP-dep_Synth/Lig_com 296 362
IPR025110 AMP-bd_C 371 445
No external refs found!