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  5. Pp3c2_390V3.1

Pp3c2_390V3.1 (EMB2780, Pp3c2_390)


Aliases : EMB2780, Pp3c2_390

Description : DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases


Gene families : OG0002006 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002006_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c2_390V3.1

Target Alias Description ECC score Gene Family Method Actions
Pp3c10_11570V3.1 EMB2780, Pp3c10_11570 DNA binding;nucleotide binding;nucleic acid... 0.02 OrthoFinder output from all 47 species
Pp3c10_25280V3.1 EMB2780, Pp3c10_25280 DNA binding;nucleotide binding;nucleic acid... 0.03 OrthoFinder output from all 47 species
Pp3c13_14630V3.1 EMB2780, Pp3c13_14630 DNA binding;nucleotide binding;nucleic acid... 0.05 OrthoFinder output from all 47 species
Pp3c15_13750V3.1 Pp3c15_13750 DNA binding;nucleotide binding;nucleic acid... 0.02 OrthoFinder output from all 47 species
Pp3c1_290V3.1 EMB2780, Pp3c1_290 DNA binding;nucleotide binding;nucleic acid... 0.02 OrthoFinder output from all 47 species
Pp3c6_15720V3.1 EMB2780, Pp3c6_15720 DNA binding;nucleotide binding;nucleic acid... 0.03 OrthoFinder output from all 47 species
Sam_g25356 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR006134 DNA-dir_DNA_pol_B_multi_dom 138 509
No external refs found!