Pp3c23_6370V3.1 (Pp3c23_6370)

Aliases : Pp3c23_6370

Description : No annotation

Gene families : OG0004437 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004437_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c23_6370V3.1
Cluster	HCCA: Cluster_73

Target	Alias	Description	ECC score	Gene Family Method
AT1G64750	ATDSS1(I), DSS1(I)	deletion of SUV3 suppressor 1(I)	0.02	OrthoFinder output from all 47 species
AT5G45010	ATDSS1(V), DSS1(V)	DSS1 homolog on chromosome V	0.01	OrthoFinder output from all 47 species
Adi_g025049	ATDSS1(V), DSS1(V)	regulatory component *(DSS1/Sem1) of TREX-2 mRNP...	0.01	OrthoFinder output from all 47 species
Aspi01Gene71829.t1	ATDSS1(V),...	regulatory component *(DSS1/Sem1) of TREX-2 mRNP...	0.02	OrthoFinder output from all 47 species
Ceric.12G057700.1	ATDSS1(V),...	regulatory component *(DSS1/Sem1) of TREX-2 mRNP...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020903.45	No alias	RNA processing.messenger ribonucleoprotein particle...	0.02	OrthoFinder output from all 47 species
Cre02.g095093	No alias	RNA processing.messenger ribonucleoprotein particle...	0.02	OrthoFinder output from all 47 species
Cre06.g263750	No alias	RNA processing.messenger ribonucleoprotein particle...	0.03	OrthoFinder output from all 47 species
GSVIVT01032498001	No alias	RNA processing.messenger ribonucleoprotein particle...	0.02	OrthoFinder output from all 47 species
Mp2g25520.1	No alias	component DSS1/Sem1 of TREX-2 mRNP trafficking complex	0.06	OrthoFinder output from all 47 species
Smo415832	ATDSS1(V), DSS1(V)	RNA processing.messenger ribonucleoprotein particle...	0.02	OrthoFinder output from all 47 species
Smo442197	ATDSS1(V), DSS1(V)	RNA processing.messenger ribonucleoprotein particle...	0.02	OrthoFinder output from all 47 species
Solyc03g114170.3.1	ATDSS1(V),...	component DSS1/Sem1 of TREX-2 mRNP trafficking complex	0.01	OrthoFinder output from all 47 species
Zm00001e025509_P001	ATDSS1(V),...	component DSS1/Sem1 of TREX-2 mRNP trafficking complex	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006405	RNA export from nucleus	None	Extended
BP	GO:0006406	mRNA export from nucleus	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006913	nucleocytoplasmic transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0008541	proteasome regulatory particle, lid subcomplex	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015931	nucleobase-containing compound transport	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0043248	proteasome assembly	IEA	Interproscan
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0050657	nucleic acid transport	None	Extended
BP	GO:0050658	RNA transport	None	Extended
BP	GO:0051028	mRNA transport	None	Extended
BP	GO:0051168	nuclear export	None	Extended
BP	GO:0051169	nuclear transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051236	establishment of RNA localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003954	NADH dehydrogenase activity	IEP	HCCA
MF	GO:0003955	NAD(P)H dehydrogenase (quinone) activity	IEP	HCCA
MF	GO:0005215	transporter activity	IEP	HCCA
MF	GO:0005319	lipid transporter activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006869	lipid transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015453	oxidoreduction-driven active transmembrane transporter activity	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	HCCA
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	HCCA
MF	GO:0022804	active transmembrane transporter activity	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
MF	GO:0050136	NADH dehydrogenase (quinone) activity	IEP	HCCA
BP	GO:0061024	membrane organization	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
BP	GO:0120009	intermembrane lipid transfer	IEP	HCCA
MF	GO:0120013	lipid transfer activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007834	DSS1_SEM1	17	73

External Links

No external refs found!

Pp3c23_6370V3.1 (Pp3c23_6370)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation