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  5. Pp3c19_40V3.1

Pp3c19_40V3.1 (Pp3c19_40)


Aliases : Pp3c19_40

Description : CCCH-type zinc finger family protein


Gene families : OG0011440 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0011440_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c19_40V3.1
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Pp3c11_26910V3.1 Pp3c11_26910 Zinc finger C-x8-C-x5-C-x3-H type family protein 0.02 OrthoFinder output from all 47 species
Pp3c11_300V3.1 Pp3c11_300 CCCH-type zinc finger family protein 0.02 OrthoFinder output from all 47 species
Pp3c15_40V3.1 Pp3c15_40 No annotation 0.03 OrthoFinder output from all 47 species
Pp3c16_20630V3.1 Pp3c16_20630 CCCH-type zinc finger family protein 0.04 OrthoFinder output from all 47 species
Pp3c19_23020V3.1 Pp3c19_23020 No annotation 0.03 OrthoFinder output from all 47 species
Pp3c23_220V3.1 Pp3c23_220 Zinc finger C-x8-C-x5-C-x3-H type family protein 0.02 OrthoFinder output from all 47 species
Pp3c4_80V3.1 Pp3c4_80 No annotation 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!