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  5. Pp3c18_5400V3.1

Pp3c18_5400V3.1 (CHS, TT4, ATCHS, Pp3c18_5400)


Aliases : CHS, TT4, ATCHS, Pp3c18_5400

Description : Chalcone and stilbene synthase family protein


Gene families : OG0000113 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000113_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c18_5400V3.1

Target Alias Description ECC score Gene Family Method Actions
Als_g18437 CHS, TT4, ATCHS EC_2.3 acyltransferase & original description: none 0.01 OrthoFinder output from all 47 species
Als_g31249 CHS, TT4, ATCHS EC_2.3 acyltransferase & original description: none 0.01 OrthoFinder output from all 47 species
Als_g43702 CHS, TT4, ATCHS EC_2.3 acyltransferase & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g29133 CHS, TT4, ATCHS EC_2.3 acyltransferase & original description: none 0.01 OrthoFinder output from all 47 species
Aop_g28405 CHS, TT4, ATCHS EC_2.3 acyltransferase & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene10440.t1 LAP6, Aspi01Gene10440 EC_2.3 acyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene31214.t1 CHS, TT4, ATCHS,... EC_2.3 acyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g34752 CHS, TT4, ATCHS EC_2.3 acyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g49730 CHS, TT4, ATCHS EC_2.3 acyltransferase & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01010578001 No alias Enzyme classification.EC_2 transferases.EC_2.3... 0.01 OrthoFinder output from all 47 species
GSVIVT01026220001 CHS, TT4, ATCHS Enzyme classification.EC_2 transferases.EC_2.3... 0.01 OrthoFinder output from all 47 species
LOC_Os07g11440.1 CHS, TT4, ATCHS,... chalcone synthase 0.01 OrthoFinder output from all 47 species
LOC_Os11g32540.1 CHS, TT4, ATCHS,... Enzyme classification.EC_2 transferases.EC_2.3... 0.01 OrthoFinder output from all 47 species
Mp2g20910.1 CHS, TT4, ATCHS chalcone synthase 0.02 OrthoFinder output from all 47 species
Pnu_g26671 CHS, TT4, ATCHS EC_2.3 acyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g31874 CHS, TT4, ATCHS EC_2.3 acyltransferase & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s2936.g028503 CHS, TT4, ATCHS EC_2.3 acyltransferase & original description: CDS=1-1116 0.01 OrthoFinder output from all 47 species
Zm00001e024400_P001 CHS, TT4, ATCHS,... Enzyme classification.EC_2 transferases.EC_2.3... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR012328 Chalcone/stilbene_synt_C 227 373
IPR001099 Chalcone/stilbene_synt_N 17 106
IPR001099 Chalcone/stilbene_synt_N 108 214
No external refs found!