1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp3c13_10890V3.1

Pp3c13_10890V3.1 (EIF3C, EIF3C-1,...)


Aliases : EIF3C, EIF3C-1, ATTIF3C1, TIF3C1, ATEIF3C-1, Pp3c13_10890

Description : eukaryotic translation initiation factor 3C


Gene families : OG0003384 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003384_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c13_10890V3.1
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00256050 EIF3C, EIF3C-1,... Protein biosynthesis.translation... 0.02 OrthoFinder output from all 47 species
Als_g01154 EIF3C, EIF3C-1,... component *(eIF3c) of eIF3 mRNA-to-PIC binding complex &... 0.02 OrthoFinder output from all 47 species
Aop_g06210 EIF3C, EIF3C-1,... component *(eIF3c) of eIF3 mRNA-to-PIC binding complex &... 0.01 OrthoFinder output from all 47 species
Cba_g69269 EIF3C, EIF3C-1,... component *(eIF3c) of eIF3 mRNA-to-PIC binding complex &... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000842.12 EIF3C, EIF3C-1,... Protein biosynthesis.translation... 0.02 OrthoFinder output from all 47 species
Cre04.g217550 EIF3C, EIF3C-1,... Protein biosynthesis.translation... 0.02 OrthoFinder output from all 47 species
Dde_g22171 EIF3C, EIF3C-1,... component *(eIF3c) of eIF3 mRNA-to-PIC binding complex &... 0.01 OrthoFinder output from all 47 species
Mp6g05320.1 EIF3C, EIF3C-1,... component eIF3c of eIF3 mRNA-to-PIC binding complex 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002763 EIF3C, EIF3C-1,... component *(eIF3c) of eIF3 mRNA-to-PIC binding complex &... 0.03 OrthoFinder output from all 47 species
Solyc01g102560.2.1 EIF3C, EIF3C-1,... component eIF3c of eIF3 mRNA-to-PIC binding complex 0.03 OrthoFinder output from all 47 species
Solyc01g102590.3.1 EIF3C, EIF3C-1,... component eIF3c of eIF3 mRNA-to-PIC binding complex 0.03 OrthoFinder output from all 47 species
Spa_g12385 EIF3C, EIF3C-1,... component *(eIF3c) of eIF3 mRNA-to-PIC binding complex &... 0.03 OrthoFinder output from all 47 species
Spa_g22534 EIF3C, EIF3C-1,... component *(eIF3c) of eIF3 mRNA-to-PIC binding complex &... 0.01 OrthoFinder output from all 47 species
Tin_g02871 EIF3C, EIF3C-1,... component *(eIF3c) of eIF3 mRNA-to-PIC binding complex &... 0.02 OrthoFinder output from all 47 species
Zm00001e006832_P001 EIF3C, EIF3C-1,... component eIF3c of eIF3 mRNA-to-PIC binding complex 0.01 OrthoFinder output from all 47 species
Zm00001e007319_P001 EIF3C, EIF3C-1,... component eIF3c of eIF3 mRNA-to-PIC binding complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEA Interproscan
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEA Interproscan
BP GO:0006413 translational initiation IEA Interproscan
MF GO:0031369 translation initiation factor binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR008905 EIF3C_N_dom 47 655
IPR000717 PCI_dom 663 791
No external refs found!