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  5. Pp3c12_25460V3.1

Pp3c12_25460V3.1 (LHCB4.1, Pp3c12_25460)


Aliases : LHCB4.1, Pp3c12_25460

Description : light harvesting complex photosystem II


Gene families : OG0003968 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003968_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c12_25460V3.1
Cluster HCCA: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00239610 LHCB4.2,... Photosynthesis.photophosphorylation.photosystem... 0.1 OrthoFinder output from all 47 species
AT3G08940 LHCB4.2 light harvesting complex photosystem II 0.13 OrthoFinder output from all 47 species
AT5G01530 LHCB4.1 light harvesting complex photosystem II 0.14 OrthoFinder output from all 47 species
Adi_g047687 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.07 OrthoFinder output from all 47 species
Adi_g079332 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.06 OrthoFinder output from all 47 species
Aev_g13668 LHCB4.2 component *(LHCb4) of LHC-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g11240 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.08 OrthoFinder output from all 47 species
Als_g08280 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g39718 LHCB4.2 component *(LHCb4) of LHC-II complex & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g05395 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g05396 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.08 OrthoFinder output from all 47 species
Aspi01Gene47726.t1 LHCB4.1, Aspi01Gene47726 component *(LHCb4) of LHC-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0173.g055756 LHCB4.2 component *(LHCb4) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Cba_g11090 No alias component *(LHCb4) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.05G075200.1 LHCB4.2, Ceric.05G075200 component *(LHCb4) of LHC-II complex & original... 0.1 OrthoFinder output from all 47 species
Ceric.06G083500.1 LHCB4.2, Ceric.06G083500 not classified & original description: pacid=50619025... 0.02 OrthoFinder output from all 47 species
Ceric.22G069400.1 LHCB4.1, Ceric.22G069400 component *(LHCb4) of LHC-II complex & original... 0.1 OrthoFinder output from all 47 species
Cre17.g720250 LHCB4.3 Photosynthesis.photophosphorylation.photosystem... 0.08 OrthoFinder output from all 47 species
Dac_g23809 LHCB4.2 component *(LHCb4) of LHC-II complex & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g45560 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g49585 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.15 OrthoFinder output from all 47 species
Dde_g10605 LHCB4.2 component *(LHCb4) of LHC-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g03348 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g21710 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.02 OrthoFinder output from all 47 species
Gb_13368 LHCB4.3 component LHCb4 of LHC-II complex 0.02 OrthoFinder output from all 47 species
Gb_38595 LHCB4.1 component LHCb4 of LHC-II complex 0.07 OrthoFinder output from all 47 species
LOC_Os07g37240.1 LHCB4.1, LOC_Os07g37240 component LHCb4 of LHC-II complex 0.08 OrthoFinder output from all 47 species
Len_g31128 LHCB4.2 component *(LHCb4) of LHC-II complex & original description: none 0.05 OrthoFinder output from all 47 species
Len_g34078 LHCB4.2 component *(LHCb4) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
MA_129206g0010 LHCB4.2 component LHCb4 of LHC-II complex 0.08 OrthoFinder output from all 47 species
Mp1g16850.1 LHCB4.1 component LHCb4 of LHC-II complex 0.12 OrthoFinder output from all 47 species
Msp_g07941 LHCB4.2 component *(LHCb4) of LHC-II complex & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g01855 LHCB4.2 component *(LHCb4) of LHC-II complex & original description: none 0.07 OrthoFinder output from all 47 species
Pir_g15460 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g33035 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g15010 LHCB4.2 component *(LHCb4) of LHC-II complex & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g23731 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0067.g016319 LHCB4.1 component *(LHCb4) of LHC-II complex & original... 0.05 OrthoFinder output from all 47 species
Smo149722 LHCB4.2 Photosynthesis.photophosphorylation.photosystem... 0.03 OrthoFinder output from all 47 species
Solyc09g014520.3.1 LHCB4.1, Solyc09g014520 component LHCb4 of LHC-II complex 0.09 OrthoFinder output from all 47 species
Spa_g08357 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50929 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.09 OrthoFinder output from all 47 species
Spa_g50931 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08576 LHCB4.1 component *(LHCb4) of LHC-II complex & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e010547_P001 LHCB4.1, Zm00001e010547 component LHCb4 of LHC-II complex 0.08 OrthoFinder output from all 47 species
Zm00001e035235_P001 LHCB4.1, Zm00001e035235 component LHCb4 of LHC-II complex 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009536 plastid IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010109 regulation of photosynthesis IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
MF GO:0010242 oxygen evolving activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0042548 regulation of photosynthesis, light reaction IEP HCCA
BP GO:0042549 photosystem II stabilization IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 70 267
No external refs found!