Pp3c12_15970V3.1 (Rap2.6L, Pp3c12_15970)

Aliases : Rap2.6L, Pp3c12_15970

Description : Integrase-type DNA-binding superfamily protein

Gene families : OG0000110 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000110_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c12_15970V3.1
Cluster	HCCA: Cluster_55

Target	Alias	Description	ECC score	Gene Family Method
AT1G79700	No alias	Integrase-type DNA-binding superfamily protein	0.02	OrthoFinder output from all 47 species
Ala_g04901	No alias	AP2-type transcription factor *(WRI/AIL) & original...	0.02	OrthoFinder output from all 47 species
Als_g33012	PLT2	AP2-type transcription factor *(WRI/AIL) & original...	0.03	OrthoFinder output from all 47 species
Aspi01Gene33912.t1	PLT2, Aspi01Gene33912	AP2-type transcription factor *(WRI/AIL) & original...	0.02	OrthoFinder output from all 47 species
Aspi01Gene38120.t1	PLT2, Aspi01Gene38120	AP2-type transcription factor *(WRI/AIL) & original...	0.02	OrthoFinder output from all 47 species
Aspi01Gene67586.t1	AP2, FLO2, FL1,...	AP2-type transcription factor *(WRI/AIL) & original...	0.02	OrthoFinder output from all 47 species
Cba_g00568	No alias	AP2-type transcription factor *(WRI/AIL) & original...	0.02	OrthoFinder output from all 47 species
Dcu_g09242	TOE3	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g21789	PLT2	AP2-type transcription factor *(WRI/AIL) & original...	0.01	OrthoFinder output from all 47 species
Len_g46694	AP2, FLO2, FL1	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Msp_g28593	ADAP	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g43589	AP2, FLO2, FL1	AP2-type transcription factor *(WRI/AIL) & original...	0.02	OrthoFinder output from all 47 species
Nbi_g11367	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g19237	AP2, FLO2, FL1	AP2-type transcription factor *(WRI/AIL) & original...	0.02	OrthoFinder output from all 47 species
Ore_g29244	AP2, FLO2, FL1	AP2-type transcription factor *(WRI/AIL) & original...	0.01	OrthoFinder output from all 47 species
Pir_g12863	AP2, FLO2, FL1	AP2-type transcription factor *(WRI/AIL) & original...	0.02	OrthoFinder output from all 47 species
Pir_g17715	AP2, FLO2, FL1	AP2-type transcription factor *(WRI/AIL) & original...	0.01	OrthoFinder output from all 47 species
Ppi_g45371	No alias	AP2-type transcription factor *(WRI/AIL) & original...	0.01	OrthoFinder output from all 47 species
Sam_g35092	No alias	AP2-type transcription factor *(WRI/AIL) & original...	0.02	OrthoFinder output from all 47 species
Solyc11g072600.3.1	RAP2.7, TOE1,...	transcription factor (AP2)	0.01	OrthoFinder output from all 47 species
Spa_g57166	AP2, FLO2, FL1	AP2-type transcription factor *(WRI/AIL) & original...	0.02	OrthoFinder output from all 47 species
Tin_g07111	AP2, FLO2, FL1	AP2-type transcription factor *(WRI/AIL) & original...	0.02	OrthoFinder output from all 47 species
Zm00001e029525_P003	RAP2.7, TOE1,...	transcription factor (AP2)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0004497	monooxygenase activity	IEP	HCCA
MF	GO:0004506	squalene monooxygenase activity	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	177	231

External Links

No external refs found!

Pp3c12_15970V3.1 (Rap2.6L, Pp3c12_15970)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation