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  5. Pp3c10_4480V3.1

Pp3c10_4480V3.1 (ATPUB17, PUB17, Pp3c10_4480)


Aliases : ATPUB17, PUB17, Pp3c10_4480

Description : plant U-box 13


Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c10_4480V3.1
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00030110 PUB15,... U-box domain-containing protein 15 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
AT1G23030 No alias ARM repeat superfamily protein 0.02 OrthoFinder output from all 47 species
AT1G71020 No alias ARM repeat superfamily protein 0.01 OrthoFinder output from all 47 species
AT5G01830 No alias ARM repeat superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g054040 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g38714 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.01 OrthoFinder output from all 47 species
Aob_g16654 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene44183.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene44184.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene44185.t1 ATPUB17, PUB17,... E3 ubiquitin ligase & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0011.g012763 PUB12, AtPUB12 not classified & original description: CDS=1-549 0.01 OrthoFinder output from all 47 species
Ceric.1Z057600.1 PUB13, ATPUB13,... E3 ubiquitin ligase & original description:... 0.01 OrthoFinder output from all 47 species
Dac_g23493 PUB18, ATPUB18 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g03347 PUB14, ATPUB14 not classified & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01006481001 PUB8, B80 U-box domain-containing protein 8 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
GSVIVT01018389001 No alias No description available 0.02 OrthoFinder output from all 47 species
Gb_13754 PUB13, ATPUB13 E3 ubiquitin ligase (PUB) 0.01 OrthoFinder output from all 47 species
LOC_Os08g32060.1 LOC_Os08g32060 E3 ubiquitin ligase (PUB) 0.01 OrthoFinder output from all 47 species
MA_196504g0010 No alias U-box domain-containing protein 1 OS=Medicago truncatula... 0.01 OrthoFinder output from all 47 species
MA_375372g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Msp_g01206 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g15616 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.01 OrthoFinder output from all 47 species
Msp_g31758 PUB8, B80 E3 ubiquitin ligase *(PUB8) & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g02363 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g25617 ATPUB17, PUB17 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g11319 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.01 OrthoFinder output from all 47 species
Pir_g12544 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g17953 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g26460 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g01237 ATPUB17, PUB17 E3 ubiquitin ligase & original description: none 0.01 OrthoFinder output from all 47 species
Ppi_g06418 PUB13, ATPUB13 E3 ubiquitin ligase & original description: none 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000382 No alias not classified & original description: CDS=1-1704 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005301 PUB13, ATPUB13 not classified & original description: CDS=201-2096 0.02 OrthoFinder output from all 47 species
Smo99101 ATPUB17, PUB17 U-box domain-containing protein 1 OS=Medicago truncatula 0.01 OrthoFinder output from all 47 species
Solyc04g007640.3.1 Solyc04g007640 E3 ubiquitin ligase (PUB) 0.01 OrthoFinder output from all 47 species
Solyc04g082440.4.1 PUB15, Solyc04g082440 U-box domain-containing protein 15 OS=Arabidopsis... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003714 transcription corepressor activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 278 347
IPR000225 Armadillo 539 576
IPR000225 Armadillo 414 450
No external refs found!