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  5. Mp7g18970.1

Mp7g18970.1 (PAB2, PABP2, ATPAB2)


Aliases : PAB2, PABP2, ATPAB2

Description : mRNA poly-A-tail binding factor (PABP)


Gene families : OG0000326 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000326_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Mp7g18970.1

Target Alias Description ECC score Gene Family Method Actions
AT1G49760 PAB8, PABP8 poly(A) binding protein 8 0.1 OrthoFinder output from all 47 species
AT2G23350 PABP4, PAB4 poly(A) binding protein 4 0.07 OrthoFinder output from all 47 species
Adi_g088081 PAB2, PABP2, ATPAB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g112648 PAB2, PABP2, ATPAB2 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g15142 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Als_g13165 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.04 OrthoFinder output from all 47 species
Als_g32811 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Als_g39199 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Aop_g02222 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Aop_g05955 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0060.g034731 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Cba_g10012 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.04 OrthoFinder output from all 47 species
Ceric.29G016700.1 PAB2, PABP2,... mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Ceric.36G019600.1 PAB2, PABP2,... mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001264.28 PAB8, PABP8 Protein biosynthesis.translation initiation.mRNA... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021244.19 PAB2, PABP2, ATPAB2 Protein biosynthesis.translation initiation.mRNA... 0.02 OrthoFinder output from all 47 species
Cre01.g039300 PAB8, PABP8 Protein biosynthesis.translation initiation.mRNA... 0.08 OrthoFinder output from all 47 species
Dac_g06601 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Dcu_g17281 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g06045 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01022079001 PAB2, PABP2, ATPAB2 Protein biosynthesis.translation initiation.mRNA... 0.06 OrthoFinder output from all 47 species
Gb_00731 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor (PABP) 0.02 OrthoFinder output from all 47 species
Gb_11804 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor (PABP) 0.01 OrthoFinder output from all 47 species
LOC_Os09g02700.1 PAB8, PABP8,... mRNA poly-A-tail binding factor (PABP) 0.06 OrthoFinder output from all 47 species
Lfl_g07915 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Lfl_g22593 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Msp_g06278 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Nbi_g14035 PAB8, PABP8 mRNA poly-A-tail binding factor *(PABP) & original... 0.01 OrthoFinder output from all 47 species
Pir_g04520 PAB8, PABP8 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Pir_g19320 PAB8, PABP8 mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Pir_g54838 PAB2, PABP2, ATPAB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g10451 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g05877 PAB8, PABP8 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0157.g023696 PAB8, PABP8 mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Sam_g10629 No alias mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Sam_g44711 No alias mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Sam_g52387 No alias mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Smo101161 PAB2, PABP2, ATPAB2 Protein biosynthesis.translation initiation.mRNA... 0.03 OrthoFinder output from all 47 species
Solyc01g107870.3.1 PAB8, PABP8,... mRNA poly-A-tail binding factor (PABP) 0.03 OrthoFinder output from all 47 species
Solyc12g088720.2.1 PAB2, PABP2,... mRNA poly-A-tail binding factor (PABP) 0.05 OrthoFinder output from all 47 species
Spa_g43378 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Tin_g14974 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Tin_g29780 PAB8, PABP8 mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e009430_P002 PAB2, PABP2,... mRNA poly-A-tail binding factor (PABP) 0.02 OrthoFinder output from all 47 species
Zm00001e033592_P004 PAB8, PABP8,... mRNA poly-A-tail binding factor (PABP) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004129 cytochrome-c oxidase activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005740 mitochondrial envelope IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
CC GO:0031967 organelle envelope IEP HCCA
CC GO:0031975 envelope IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR002004 PABP_HYD 581 647
IPR000504 RRM_dom 117 184
IPR000504 RRM_dom 208 276
IPR000504 RRM_dom 311 379
IPR000504 RRM_dom 29 99
No external refs found!