1. Home
  2. Species
  3. Marchantia polymorpha
  4. Sequence
  5. Mp7g13330.1

Mp7g13330.1


Description : component SF3B3 of splicing factor 3B complex


Gene families : OG0007395 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007395_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp7g13330.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00171130 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
AT3G55200 No alias Cleavage and polyadenylation specificity factor (CPSF) A... 0.02 OrthoFinder output from all 47 species
AT3G55220 No alias Cleavage and polyadenylation specificity factor (CPSF) A... 0.05 OrthoFinder output from all 47 species
Adi_g013155 No alias component *(SF3B3) of splicing factor 3B complex &... 0.01 OrthoFinder output from all 47 species
Ala_g02677 No alias component *(SF3B3) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Aop_g07573 No alias component *(SF3B3) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Azfi_s0213.g058260 No alias component *(SF3B3) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Cba_g04093 No alias component *(SF3B3) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Ceric.26G015800.1 Ceric.26G015800 component *(SF3B3) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001024.5 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
Cre08.g372800 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder output from all 47 species
GSVIVT01005970001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder output from all 47 species
Gb_38044 No alias component SF3B3 of splicing factor 3B complex 0.04 OrthoFinder output from all 47 species
LOC_Os02g04480.1 LOC_Os02g04480 component SF3B3 of splicing factor 3B complex 0.04 OrthoFinder output from all 47 species
MA_10430596g0010 No alias component SF3B3 of splicing factor 3B complex 0.03 OrthoFinder output from all 47 species
Sam_g07166 No alias component *(SF3B3) of splicing factor 3B complex &... 0.02 OrthoFinder output from all 47 species
Smo171237 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Solyc04g010260.3.1 Solyc04g010260 component SF3B3 of splicing factor 3B complex 0.07 OrthoFinder output from all 47 species
Spa_g06875 No alias component *(SF3B3) of splicing factor 3B complex &... 0.03 OrthoFinder output from all 47 species
Zm00001e013611_P001 Zm00001e013611 component SF3B3 of splicing factor 3B complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP HCCA
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006480 N-terminal protein amino acid methylation IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008312 7S RNA binding IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019905 syntaxin binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031365 N-terminal protein amino acid modification IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
CC GO:0048500 signal recognition particle IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR004871 Cleavage/polyA-sp_fac_asu_C 861 1180
No external refs found!