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  5. Mp7g10030.1

Mp7g10030.1 (PTB2, ATPTB2)


Aliases : PTB2, ATPTB2

Description : PTB-type RNA splicing factor


Gene families : OG0001527 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001527_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp7g10030.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00107p00143110 PTB2, ATPTB2,... RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
LOC_Os03g25980.2 PTB1, PTB,... PTB-type RNA splicing factor 0.03 OrthoFinder output from all 47 species
Lfl_g06615 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g12428 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g11612 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e001826_P003 PTB1, PTB,... PTB-type RNA splicing factor 0.02 OrthoFinder output from all 47 species
Zm00001e022452_P003 PTB1, PTB,... PTB-type RNA splicing factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 21 72
IPR021790 PTBP1-like_RRM2 250 328
No external refs found!