Mp7g06450.1

Description : tRNA pseudouridine synthase (TruA)

Gene families : OG0006025 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006025_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp7g06450.1
Cluster	HCCA: Cluster_41

Target	Alias	Description	ECC score	Gene Family Method
AT1G20370	No alias	Pseudouridine synthase family protein	0.09	OrthoFinder output from all 47 species
AT1G76120	No alias	Pseudouridine synthase family protein	0.03	OrthoFinder output from all 47 species
Adi_g045626	No alias	EC_5.4 intramolecular transferase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g02568	No alias	EC_5.4 intramolecular transferase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g07265	No alias	EC_5.4 intramolecular transferase & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0051.g031259	No alias	EC_5.4 intramolecular transferase & original...	0.03	OrthoFinder output from all 47 species
Cba_g11010	No alias	EC_5.4 intramolecular transferase & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.09G069000.1	Ceric.09G069000	EC_5.4 intramolecular transferase & original...	0.03	OrthoFinder output from all 47 species
Dcu_g10557	No alias	EC_5.4 intramolecular transferase & original description: none	0.01	OrthoFinder output from all 47 species
GSVIVT01008716001	No alias	RNA processing.RNA...	0.02	OrthoFinder output from all 47 species
LOC_Os02g44810.1	LOC_Os02g44810	tRNA pseudouridine synthase (TruA)	0.04	OrthoFinder output from all 47 species
Sam_g39381	No alias	EC_5.4 intramolecular transferase & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g17957	No alias	EC_5.4 intramolecular transferase & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e015383_P004	Zm00001e015383	tRNA pseudouridine synthase (TruA)	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	IEA	Interproscan
MF	GO:0009982	pseudouridine synthase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016866	intramolecular transferase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0004809	tRNA (guanine-N2-)-methyltransferase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0008033	tRNA processing	IEP	HCCA
MF	GO:0008170	N-methyltransferase activity	IEP	HCCA
MF	GO:0008173	RNA methyltransferase activity	IEP	HCCA
MF	GO:0008175	tRNA methyltransferase activity	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0032040	small-subunit processome	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR020097	PsdUridine_synth_TruA_a/b_dom	392	497

External Links

No external refs found!

Mp7g06450.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation