Mp7g00250.1

Description : RNA helicase (Brr2)

Gene families : OG0001175 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001175_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp7g00250.1
Cluster	HCCA: Cluster_10

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00110p00146400	evm_27.TU.AmTr_v1...	DExH-box ATP-dependent RNA helicase DExH14...	0.05	OrthoFinder output from all 47 species
AT5G61140	No alias	U5 small nuclear ribonucleoprotein helicase	0.03	OrthoFinder output from all 47 species
Adi_g117139	emb1507	RNA helicase *(Brr2) & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g04355	emb1507	RNA helicase *(Brr2) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g08117	emb1507	RNA helicase *(Brr2) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g09018	No alias	RNA helicase *(Brr2) & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene33378.t1	Aspi01Gene33378	RNA helicase *(Brr2) & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g05344	No alias	RNA helicase *(Brr2) & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.1Z134800.1	Ceric.1Z134800	not classified & original description: pacid=50597112...	0.03	OrthoFinder output from all 47 species
Ceric.1Z263400.1	Ceric.1Z263400	RNA helicase *(Brr2) & original description:...	0.03	OrthoFinder output from all 47 species
Dac_g12553	No alias	RNA helicase *(Brr2) & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g12406	No alias	RNA helicase *(Brr2) & original description: none	0.05	OrthoFinder output from all 47 species
Ehy_g12876	emb1507	RNA helicase *(Brr2) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01007875001	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.03	OrthoFinder output from all 47 species
Gb_18049	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.05	OrthoFinder output from all 47 species
LOC_Os03g11470.1	LOC_Os03g11470	DExH-box ATP-dependent RNA helicase DExH14...	0.03	OrthoFinder output from all 47 species
Lfl_g09106	No alias	RNA helicase *(Brr2) & original description: none	0.04	OrthoFinder output from all 47 species
MA_10429486g0010	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.02	OrthoFinder output from all 47 species
MA_10434882g0010	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.02	OrthoFinder output from all 47 species
MA_10434991g0010	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.02	OrthoFinder output from all 47 species
MA_81219g0030	emb1507	DExH-box ATP-dependent RNA helicase DExH12...	0.02	OrthoFinder output from all 47 species
Sam_g18045	No alias	RNA helicase *(Brr2) & original description: none	0.02	OrthoFinder output from all 47 species
Smo178863	No alias	DExH-box ATP-dependent RNA helicase DExH14...	0.02	OrthoFinder output from all 47 species
Zm00001e038727_P001	Zm00001e038727	DExH-box ATP-dependent RNA helicase DExH14...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006354	DNA-templated transcription elongation	IEP	HCCA
BP	GO:0006368	transcription elongation by RNA polymerase II	IEP	HCCA
CC	GO:0008023	transcription elongation factor complex	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
CC	GO:0016593	Cdc73/Paf1 complex	IEP	HCCA
CC	GO:0035658	Mon1-Ccz1 complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	1115	1280
IPR004179	Sec63-dom	1597	1909
IPR001650	Helicase_C	1393	1478
IPR001650	Helicase_C	497	641
IPR011545	DEAD/DEAH_box_helicase_dom	266	439
IPR004179	Sec63-dom	765	1071

External Links

No external refs found!

Mp7g00250.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation