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  5. Mp6g10790.1

Mp6g10790.1 (STA1, EMB2770)


Aliases : STA1, EMB2770

Description : protein factor PRPF6/PRP1/STA1 of U5 small nuclear ribonucleoprotein particle (snRNP)


Gene families : OG0006034 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006034_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp6g10790.1

Target Alias Description ECC score Gene Family Method Actions
AT4G03430 STA1, EMB2770 pre-mRNA splicing factor-related 0.03 OrthoFinder output from all 47 species
Adi_g055878 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Aob_g02331 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.02 OrthoFinder output from all 47 species
Ceric.1Z128700.1 STA1, EMB2770,... component *(PRPF6) of U5 snRNP complex & original... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000880.19 STA1, EMB2770 Protein STABILIZED1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Cre14.g633650 STA1, EMB2770 RNA processing.RNA splicing.U2-type-intron-specific... 0.06 OrthoFinder output from all 47 species
Dcu_g14994 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01030385001 STA1, EMB2770 Protein STABILIZED1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Gb_02940 STA1, EMB2770 protein factor PRPF6/PRP1/STA1 of U5 small nuclear... 0.03 OrthoFinder output from all 47 species
Lfl_g13254 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.02 OrthoFinder output from all 47 species
MA_18853g0010 STA1, EMB2770 protein factor PRPF6/PRP1/STA1 of U5 small nuclear... 0.02 OrthoFinder output from all 47 species
Msp_g06219 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.02 OrthoFinder output from all 47 species
Nbi_g11692 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.02 OrthoFinder output from all 47 species
Ore_g19399 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Pir_g09796 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.03 OrthoFinder output from all 47 species
Ppi_g32052 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.02 OrthoFinder output from all 47 species
Sam_g26501 No alias component *(PRPF6) of U5 snRNP complex & original... 0.05 OrthoFinder output from all 47 species
Spa_g01165 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.02 OrthoFinder output from all 47 species
Tin_g02882 STA1, EMB2770 component *(PRPF6) of U5 snRNP complex & original... 0.04 OrthoFinder output from all 47 species
Zm00001e018293_P001 STA1, EMB2770,... protein factor PRPF6/PRP1/STA1 of U5 small nuclear... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR010491 PRP1_N 18 184
No external refs found!