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  5. Mp6g08160.1

Mp6g08160.1 (ATRZ-1A)


Aliases : ATRZ-1A

Description : RNA chaperone (RZ1|GR-RBP)


Gene families : OG0000073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp6g08160.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00256900 GRP2, ATGRP2,... RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
AMTR_s00030p00195240 CCR2, ATGRP7,... Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
AMTR_s00030p00198740 CCR2, ATGRP7,... Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT5G61030 GR-RBP3 glycine-rich RNA-binding protein 3 0.03 OrthoFinder output from all 47 species
Adi_g022151 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g058531 No alias RNA chaperone *(RZ1) & original description: none 0.01 OrthoFinder output from all 47 species
Adi_g081479 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g111293 CCR2, ATGRP7,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Als_g10875 ATRZ-1A RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g24232 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g61147 GR-RBP4, GRP4 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g34911 GR-RBP3 RNA editing factor *(ORRM3) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g00926 GR-RBP3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g01139 No alias RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene19057.t1 Aspi01Gene19057 RNA chaperone *(RZ1) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g009790 CCR2, ATGRP7,... not classified & original description: CDS=136-657 0.03 OrthoFinder output from all 47 species
Dac_g33383 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g00500 CCR2, ATGRP7,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g03034 No alias RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08529 ATRZ-1A RNA chaperone *(RZ1) & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g48605 No alias RNA chaperone *(RZ1) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g26781 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g31555 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_37118 GRP2, ATGRP2, GR-RBP2 RNA editing factor (ORRM) 0.02 OrthoFinder output from all 47 species
LOC_Os03g17060.1 LOC_Os03g17060 Organelle RRM domain-containing protein 2, mitochondrial... 0.06 OrthoFinder output from all 47 species
LOC_Os03g61990.3 ATRZ-1A, LOC_Os03g61990 RNA chaperone (RZ1|GR-RBP) 0.04 OrthoFinder output from all 47 species
Msp_g32203 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g07272 CCR2, ATGRP7,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g05800 GRP2, ATGRP2, GR-RBP2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g17831 ATRZ-1A RNA chaperone *(RZ1) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g26099 CCR2, ATGRP7,... not classified & original description: none 0.01 OrthoFinder output from all 47 species
Smo140819 GRP2, ATGRP2, GR-RBP2 RNA processing.organelle machineries.RNA... 0.02 OrthoFinder output from all 47 species
Spa_g12968 GR-RBP4, GRP4 RNA editing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g00653 GR-RBP5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g38016 No alias RNA ediTing factor *(ORRM3) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g41354 GR-RBP4, GRP4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e008185_P001 Zm00001e008185 Small RNA-binding protein 11, chloroplastic... 0.04 OrthoFinder output from all 47 species
Zm00001e039608_P001 GR-RBP3, Zm00001e039608 RNA editing factor (ORRM) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003713 transcription coactivator activity IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 121 136
IPR000504 RRM_dom 10 78
No external refs found!