Aliases : RDO4, HUB1
Description : RING-HC-class E3 ligase
Gene families : OG0001584 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001584_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G55250 | HUB2 | histone mono-ubiquitination 2 | 0.02 | OrthoFinder output from all 47 species | |
AT2G44950 | RDO4, HUB1 | histone mono-ubiquitination 1 | 0.03 | OrthoFinder output from all 47 species | |
Adi_g010133 | RDO4, HUB1 | E3 ubiquitin ligase *(HUB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Adi_g059356 | RDO4, HUB1 | E3 ubiquitin ligase *(HUB) & original description: none | 0.01 | OrthoFinder output from all 47 species | |
Adi_g104160 | RDO4, HUB1 | E3 ubiquitin ligase *(HUB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Adi_g104742 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aev_g20568 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ala_g02632 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Als_g01150 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Aob_g02332 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aop_g09718 | RDO4, HUB1 | E3 ubiquitin ligase *(HUB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Cba_g32079 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ceric.14G031800.1 | RDO4, HUB1,... | E3 ubiquitin ligase *(HUB) & original description:... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.21G031900.1 | HUB2, Ceric.21G031900 | E3 ubiquitin ligase *(HUB) & original description:... | 0.03 | OrthoFinder output from all 47 species | |
Cre14.g625802 | No alias | Protein degradation.peptide tagging.Ubiquitin... | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g04023 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g04109 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Ehy_g05021 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01018223001 | RDO4, HUB1 | Protein degradation.peptide tagging.Ubiquitin... | 0.05 | OrthoFinder output from all 47 species | |
Gb_28646 | HUB2 | RING-HC-class E3 ligase | 0.02 | OrthoFinder output from all 47 species | |
Len_g12516 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Lfl_g11288 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
MA_10430809g0020 | HUB2 | RING-HC-class E3 ligase | 0.02 | OrthoFinder output from all 47 species | |
MA_10433221g0010 | RDO4, HUB1 | RING-HC-class E3 ligase | 0.02 | OrthoFinder output from all 47 species | |
MA_592562g0010 | HUB2 | RING-HC-class E3 ligase | 0.02 | OrthoFinder output from all 47 species | |
Msp_g06195 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ore_g08622 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ore_g35898 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Pir_g10428 | RDO4, HUB1 | E3 ubiquitin ligase *(HUB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g01320 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ppi_g07599 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0171.g024399 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: CDS=1-1974 | 0.03 | OrthoFinder output from all 47 species | |
Sam_g12359 | No alias | E3 ubiquitin ligase *(HUB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Sam_g35279 | No alias | E3 ubiquitin ligase *(HUB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Spa_g08099 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Spa_g12693 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Spa_g55706 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Tin_g06090 | HUB2 | E3 ubiquiTin ligase *(HUB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Tin_g15227 | RDO4, HUB1 | E3 ubiquiTin ligase *(HUB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e013143_P005 | RDO4, HUB1,... | RING-HC-class E3 ligase | 0.06 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | HCCA |
BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | HCCA |
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
BP | GO:0006401 | RNA catabolic process | IEP | HCCA |
BP | GO:0006402 | mRNA catabolic process | IEP | HCCA |
BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
BP | GO:0019439 | aromatic compound catabolic process | IEP | HCCA |
BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | HCCA |
BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | HCCA |
BP | GO:0046700 | heterocycle catabolic process | IEP | HCCA |
BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:1901361 | organic cyclic compound catabolic process | IEP | HCCA |
No InterPro domains available for this sequence
No external refs found! |