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  5. Mp6g00340.1

Mp6g00340.1


Description : no hits & (original description: none)


Gene families : OG0004336 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004336_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp6g00340.1
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AT2G44200 No alias CBF1-interacting co-repressor CIR, N-terminal;Pre-mRNA... 0.07 OrthoFinder output from all 47 species
Dac_g29652 No alias component *(CWC25) of MAC spliceosome-associated complex... 0.03 OrthoFinder output from all 47 species
Ehy_g09170 No alias component *(CWC25) of MAC spliceosome-associated complex... 0.02 OrthoFinder output from all 47 species
GSVIVT01018754001 No alias No description available 0.02 OrthoFinder output from all 47 species
LOC_Os08g39090.1 LOC_Os08g39090 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Smo410480 No alias Solute transport.carrier-mediated transport.MFS... 0.03 OrthoFinder output from all 47 species
Solyc02g084340.3.1 Solyc02g084340 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e003453_P002 Zm00001e003453 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR019339 CIR_N_dom 11 46
IPR022209 CWC25 64 157
No external refs found!